Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3956 187 6e-42 seq4168 143 6e-29 seq5663 113 1e-19 seq4879 95.1 3e-14 seq9406 93.3 1e-13 >seq3956 Length=1773 Score = 187 bits (206), Expect = 6e-42 Identities = 211/283 (75%), Gaps = 0/283 (0%) Strand=Plus/Plus Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504 ||||||| || ||||||| ||||||||| | | ||||| | ||| ||| | | |||| Sbjct 239 TATATTTGATTTTTGGTGCTTTTTCTGGTGTAGTTGGTACAACATTATCTCTTTTAATAA 298 Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACG 7564 | | |||||||| || ||| |||||| || | || ||| || | || || | Sbjct 299 GAATGGAATTAGCACAACCTGGTAATCAAATTTTTATGGGAAATCATCATTTATATAATG 358 Query 7565 TTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAG 7624 || || |||| |||||||| || | |||||||||||| | |||||||| || | || | Sbjct 359 TTGTTGTTACTGCGCATGCTTTCTTAATGATTTTCTTTATGGTTATGCCTATTTTAATTG 418 Query 7625 GCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAA 7684 | || ||||| || || ||||| ||||||||||| ||||| || ||||||||||| || | Sbjct 419 GAGGCTTCGGTAACTGGTTCGTACCTTTAATGATCGGTGCACCAGATATGGCTTTCCCTA 478 Query 7685 GGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | | || ||||| |||||||| ||| |||| ||||| ||||| Sbjct 479 GAATGAATAATATTAGTTTTTGGTTATTACCTCCTTCATTATT 521 Score = 98.7 bits (108), Expect = 2e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || || ||||| || |||||||||||||| | | |||||| ||||| || || Sbjct 919 TTCAGGGTGTCCGAAAAACCAAAATAAATGTTGATATAATACAGGATCACCTCCACCAGA 860 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||| | || |||||| ||||||||||||||||| |||| Sbjct 859 TGGATCATAGAATGAAGTATTTAAATTTCTATCAGTTAATAACA 816 Score = 91.5 bits (100), Expect = 4e-13 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||||||||| ||||||| ||| | || || | || |||| Sbjct 740 AAAGGTAATCTATGAAAACTTAAACCAGGAGCTCTCATGTTATAAATAGTTGAAAGAAAG 681 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | || || ||||| | | ||||||||||| || |||||||| Sbjct 680 TTAATAGCACCTAATAATGATGAAATACCAGATAAGTGTAAACTAAAAATAGCTAAATCT 621 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || || || || |||| | || ||| || |||||||| || || || Sbjct 620 ACAGAAGGACCTGAATGTGCTTGTACACTTGA---TAATGGTGGGTAAACAGTCCAACCA 564 Query 371542 GT 371543 || Sbjct 563 GT 562 >seq4168 Length=1621 Score = 143 bits (158), Expect = 6e-29 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||||||||| || || |||||||| |||||||||||||| ||||| Sbjct 555 GAAGATTTGACCATCAGTAATAGAAATTACGTTTGTAGGAATATAAGCAGAAACGTCACC 614 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | ||||||||| ||||||| ||| |||||||||| |||||||| Sbjct 615 AGCTTGAGTTTCAATAACAGGTAAAGCTGTTAATGAACCACCACCAATTTTTTTATT 671 >seq5663 Length=928 Score = 113 bits (124), Expect = 1e-19 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | ||||||||| ||| | || ||||| Sbjct 735 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAA-ACTTTTTTAAAGGCAG 793 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 794 CAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 837 >seq4879 Length=1216 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/148 (76%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATT-AAACCACATACTCCACCGCTTATAC 7789 || ||||||||| |||| |||| |||| |||| ||||||||| ||||||||||| | Sbjct 476 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTTAAACCACATGCTCCACCGCTTGTGT 417 Query 7790 AATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-AT 7848 | || |||||| || |||||| ||| | |||||| | || | ||||| ||| | | Sbjct 416 AGGCTCCCGTCAATTCCTTTGAATTTCGATCTTGCGATTATACTTTTCAGGCGGAGTGCT 357 Query 7849 TTACGCGTTAGCTTAATTAATATAAAAA 7876 | |||||||||||| || || |||||| Sbjct 356 TAACGCGTTAGCTTGAT--ATCTAAAAA 331 >seq9406 Length=387 Score = 93.3 bits (102), Expect = 1e-13 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 ||||| ||||||||| |||| ||||||||||| ||||||| ||||||| ||||| | | Sbjct 219 AGGTGGCACAGAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGG 160 Query 372683 TAAAACGATGTATAGGG-TCTGACAC 372707 ||| | ||||||||||| |||||||| Sbjct 159 TAACATGATGTATAGGGTTCTGACAC 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192361844172296