Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq238 120 6e-22 seq44 120 6e-22 seq3662 93.3 9e-14 seq543 87.8 4e-12 >seq238 Length=20387 Score = 120 bits (132), Expect = 6e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||||||||| |||| ||| ||||| || Sbjct 7012 TCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTAATGTCGAGG 7071 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||||| |||||||||||||||||||| || ||||| || | |||||| || ||| Sbjct 7072 TGCTCCTCAATGTGGTGGAAAGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTGC 7131 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||||| |||| || | || || || |||| || ||||| || Sbjct 7132 TTCCACACCGTACCGACCGTAGGCTCGACCTCACCCGTCAGCATCTTGATGAGCGTCGAC 7191 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 7192 TTACCGGCACCGTT 7205 >seq44 Length=43120 Score = 120 bits (132), Expect = 6e-22 Identities = 302/454 (67%), Gaps = 4/454 (1%) Strand=Plus/Plus Query 273606 CTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTC 273665 ||||| | | ||| |||||||| |||||||| || | || || | ||| | || Sbjct 26297 CTCGGGATCTGCGTCGACCAACCTGTGCCAATGCCTTCTGCGCCGTTGATCAGCAGCATC 26356 Query 273666 GGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTC 273725 || | || || || ||||| | |||||| | | | |||||||||| | ||| || Sbjct 26357 GGCAGGATCGGCACGTAATAGTGGGGCTCCACTGGGTACCCATCGTCGTCCACGTAGCTC 26416 Query 273726 AACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAA 273785 | || || ||||| || || | | ||||| | | ||| |||||| Sbjct 26417 AGCAGCGCGTCATCGTCCTCTGGAAACAGCAGACGCGTGTACTTCTGCAGCAACGTGAAG 26476 Query 273786 ATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCG 273845 || || | | ||| || ||||||||| || ||||| | || |||||||| ||| Sbjct 26477 ATATAGCGCGGACTTGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGTCCCGAC 26536 Query 273846 GGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTC 273905 || ||| | | |||||| |||||| || ||||| ||||| || || || ||| Sbjct 26537 GGATACAGCAATGGCAGGTTGTTAGCACCGACATAGTCCTGCGCCATGTTGACAATCGTC 26596 Query 273906 CCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA-TAACCACTGAA 273964 || || || ||||||||||||| || || |||| || || | | |||||| || Sbjct 26597 GAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCTC-GCTACAGTAACCAGCGAG 26655 Query 273965 CTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGA-ATGCGGAATACAACACCTTCC 274023 ||| || ||||| || || |||||| || ||||| | | || | ||| |||||| | Sbjct 26656 CTGCGCGACCTTGACCTCCTTCGTCAGCTTGCGCTTCAGACACGCGA-ACAGCACCTTGC 26714 Query 274024 GCTGCGAGGGCTTGAACCCATCAACGACCGATGG 274057 |||||||| ||||| ||| || || || || || Sbjct 26715 GCTGCGAGACCTTGAGCCCGTCGACCACGGACGG 26748 >seq3662 Length=2004 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 233 ACCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 174 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 |||||||||||| ||||| || || || ||||| ||||||| || || || || Sbjct 173 AAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATC 120 >seq543 Length=13273 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 283003 TGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||| |||||||| ||||| || | || || ||||||||| ||||| ||||| ||| Sbjct 1 TGTCCTGGATCTTCTGCTTG-ACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTG 59 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACAA 283111 |||||||| || |||| |||||| ||||| |||||||| || | ||||| Sbjct 60 ATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTTTACCTACAA 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046590548640936