Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq273 174 3e-38 seq768 105 1e-17 seq10076 91.5 3e-13 seq8991 91.5 3e-13 >seq273 Length=27858 Score = 174 bits (192), Expect = 3e-38 Identities = 460/689 (67%), Gaps = 25/689 (4%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| || || || | Sbjct 24014 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTGATATCCAA 23955 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||||| ||||||||||| || ||||| || ||||| || | |||||| || || Sbjct 23954 GTGCTCCTCAATGTGGTGGAAGGCGTGCTGGGCGACGTAGGCGAAACGCATGGCCGGGTG 23895 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||||| |||| || | || ||||| | || ||| || || || Sbjct 23894 CTTCCAGACCGTACCGACAGTGGGCTCAACTTCACCCGTCAACATCTTGATAAGAGTCGA 23835 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATT 319229 || || |||||||| ||| || ||| |||| | ||| ||||| | | || Sbjct 23834 CTTGCCGGCACCGTTGGGGCCAACAACAGCGATACGCGAGGCGAGCGAACAC--GTCA-- 23779 Query 319230 CAC-GTTGTCAAAGATTA---GTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT- 319284 ||| | | || ||| | || || || || |||| | || ||| ||| Sbjct 23778 CACTGATATCGCGGATCGACGGCTTGTCACGGCCAGGGTACTGGTACGT-ACAGTTCGTC 23720 Query 319285 AGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 319341 || ||||| ||| || | ||| ||||| | | ||||| || ||||| ||| Sbjct 23719 AGACGAATGATCGGCTTACCCTTGTTCT---TGATATCGGCAAGGAAACCCGGCTCAGGG 23663 Query 319342 AACTTCCACGTG--GTCTTC-GTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGC 319398 ||| | || || | | | | ||| ||| ||||||| || | || || | Sbjct 23662 AACGTGAACTTGAAGGCAGCAGCCTC---AAGCTCGTAGTACGTCTTAGCCTCCGGCTTC 23606 Query 319399 TTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAA 319458 | ||| |||||||| || || || ||||||||| |||||||||| |||| ||||| Sbjct 23605 TGCTTGACGAACTCCGAAAGGTTACCCTTGTACGTCTTCAGCTTGCGGTTC---TCGTAG 23549 Query 319459 TGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCAC 319518 ||||| || ||||| || | ||||||||| ||||||||||| ||||| || | || Sbjct 23548 TGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCGGAGTCGTGCGACACGATGAGCGAC 23489 Query 319519 GAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGA 319578 | |||| | | ||| | ||||||| || | |||| | ||||| ||| | Sbjct 23488 GTCACGTTCGTGAGGCTCGTCAGGTAGTCCTCGAGCCACTTGACGTTGTGGACATCCAAG 23429 Query 319579 TGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 319638 ||||| |||||||| || || || || | | || |||| |||||| ||||| || | Sbjct 23428 TGGTTCGTCGGCTCATCGAGCAGAAGAATATCAGCCTTCATGAGCATGGCACGGGCCAAC 23369 Query 319639 GCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 | || ||||| ||||| || || ||||| Sbjct 23368 TCAAGCTTCATCTTCCAACCACCCGAAAG 23340 >seq768 Length=12512 Score = 105 bits (116), Expect = 1e-17 Identities = 201/289 (70%), Gaps = 8/289 (3%) Strand=Plus/Minus Query 281735 CAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCC 281794 |||| ||||||||| || | || |||||| ||| || ||||| || |||| || || Sbjct 9952 CAGTAGCGTGAAGATGTAACGTGGGCTCGCGGCGTCCTTGCCACCTTGTAGCCGCGTGCC 9893 Query 281795 AAACTGACCCTCCGGCAACA--ACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCC 281852 |||||| ||| ||| | | | | | | ||| ||| ||||| || ||||| ||| Sbjct 9892 AAACTGGCCCGACGGATAGAGGAGCGGC--AGGTTGTTGGCGCCGACATAGTCCTGCGCC 9835 Query 281853 AGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCA 281912 | ||||||||| ||| || ||||| |||| ||||||||||| || |||| || || Sbjct 9834 ATGTTGACGATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGATACGCCGTGTGCTC-GCT 9776 Query 281913 ACA-TAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGA-AAGCGC 281970 || ||||| | ||| |||||||| || || |||| ||||| |||| ||| Sbjct 9775 GCAGTAACCCGCCAGCTGCGCTACCTTGACTTCCTTCGTCAGCTTGCGCTTGAGGCACGC 9716 Query 281971 AATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGG 282019 || | || || || || || || ||||| ||||| ||||| || || Sbjct 9715 AA-ACAAAACCTTCCGCTGCGAGACCTTGAGCCCATCGACGACGGAGGG 9668 >seq10076 Length=572 Score = 91.5 bits (100), Expect = 3e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 165721 TCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACGATGGG 165780 |||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||| Sbjct 90 TCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGG 31 >seq8991 Length=683 Score = 91.5 bits (100), Expect = 3e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 165721 TCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACGATGGG 165780 |||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||| Sbjct 1 TCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGG 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057618503804060