Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3341 333 3e-86 seq200 147 2e-30 seq2944 140 3e-28 seq418 93.3 4e-14 >seq3341 Length=2704 Score = 333 bits (368), Expect = 3e-86 Identities = 454/627 (72%), Gaps = 10/627 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | || | |||||||| ||| ||||| | ||||| || || | || Sbjct 1458 GAGCCGTTCCTTCAGGAGAACCCGAACCGCTTCGTCCTCTTCCCGATTCAGGAGAACGAA 1517 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT- 116694 |||||| |||||||| |||||||||||| |||||||||| ||| ||| | || || Sbjct 1518 GTGTGGCAGATGTACAAGAAGGCCGAGGCGAGCTTCTGGACCGCCGAAGAGATCGATCTT 1577 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || || | | | || |||||| | | | | |||||||||||| | ||||||||||| Sbjct 1578 GTGCACGACCTCAAG-GACTGGAACAACCTCACGGACAACGAGCGCTACTTCATCAAGCA 1636 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||| || || || |||||||| |||||||| ||||||||||| || | | | || Sbjct 1637 CGTGCTCGCGTTCTTTGCCGCCAGTGACGGCATTGTCAACGAGAACCTCGCCATGAACTT 1696 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | ||| ||||||||||| | |||||||| |||||||||||||| ||||||||||| | Sbjct 1697 CAG-CAGCGAGGTGCAGGTCCCGGAGGCGCGTTGCTTCTACGGCTTCCAGATCGCCATCG 1755 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGG 116930 ||||| | ||||| || |||||||| || || ||||||||| | | | ||| Sbjct 1756 AGAACATCCACTCTGAGGTGTATTCGCTGCTTATTGACACGTACATCAAGGACCAGACGG 1815 Query 116931 AGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990 || |||| | || | | ||| || ||||| || || ||||| | |||||||| Sbjct 1816 AGAAGAACCACCTTCTCCG---CGCGATTGAGACCATCCCTTGCGTGCAGAAGAAGGCCC 1872 Query 116991 AGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCT 117050 | ||||| || ||| || | | || || || | |||||| | || |||| Sbjct 1873 ACTGGGCTCTCAAGTGGTGCGACTCGCGCCGCGCGGCGTTTGCGGAGCGCATTGTCGCCT 1932 Query 117051 TCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGA 117110 ||||||||||||||||| ||||||| ||||| ||| | | || || ||||| |||| Sbjct 1933 TCGCGGCCGTCGAGGGCATCTTCTTCTCGGGTTCTTTTTGCTCGATCTTCTGGCTTAAGA 1992 Query 117111 AACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTC 117170 | || ||||||||||||||||| | ||| |||||||||||||| | || ||||| | Sbjct 1993 AGCGTGGCCTCATGCCCGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGATGAGGGCC 2052 Query 117171 TGCATTGCGACTTTGCCTGTTTGCTGT 117197 | || |||||||| || || |||||| Sbjct 2053 TCCACTGCGACTTCGCGTGCCTGCTGT 2079 >seq200 Length=35225 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || || || ||||| || ||||| |||||||||| | Sbjct 31109 AAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCC 31050 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || ||| | | | ||||| | || || | ||||| ||||||||||| |||| Sbjct 31049 TTCGGATAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGA 30990 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||| Sbjct 30989 TCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTA 30930 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | ||||| || || ||| | ||| || | || || Sbjct 30929 CAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTCCGCCTGCGTGGTGG 30879 >seq2944 Length=3149 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| || ||||| | ||||| || | | Sbjct 2841 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 2900 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| ||||||||||| ||||||| Sbjct 2901 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 2959 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||| || |||| ||||| || |||||||| Sbjct 2960 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACAA 3019 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | |||||||| || ||| |||| Sbjct 3020 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 3055 >seq418 Length=20579 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861 |||| ||||| || || |||| ||| ||||| ||||| || || | ||||| ||| | Sbjct 5092 CGGATCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGG 5151 Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||||||||||| | |||||||| || ||| | ||| || | || || ||| Sbjct 5152 ACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGCCTGCGTGGTGGTGGC 5210 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861 |||| ||||| || || |||| ||| ||||| ||||| || || | ||||| ||| | Sbjct 5353 CGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCGG 5412 Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||||||||||| | || ||||| || ||| | ||| || | || || ||| Sbjct 5413 ACTACAACATCCAGAAGGAGTCGACCCTGCACCTCGTGCTCCGCCTGCGTGGTGGTGGC 5471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515121553081120