Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq81 196 4e-45 seq200 131 1e-25 seq3296 129 5e-25 seq2944 109 5e-19 >seq81 Length=54637 Score = 196 bits (216), Expect = 4e-45 Identities = 535/817 (65%), Gaps = 18/817 (2%) Strand=Plus/Minus Query 132916 TGCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCG 132975 |||| | || |||||||| || || || |||| ||||||||| ||||| || || Sbjct 10157 TGCGGAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAGAAGTGCAT---CG 10101 Query 132976 ACACCACCGAG-TAA--GTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTA 133032 || | | | | | || || ||||||| | |||||||| || ||||| | Sbjct 10100 ACGTGAGCTTGCTGATCGTCGGCTCGGCGATGTGCACGTTCAGCGACTGGCTCTGGCAGA 10041 Query 133033 TGAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCG 133092 || | | | |||||||| ||||||| | | ||| ||||||||||| | | Sbjct 10040 TGTAGGCGCCGCGGTCGGCCGCCATGTCCAGCACGGCCTTCTGCTTGATCTCCCACACGG 9981 Query 133093 TCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTT 133152 ||||| | | |||||| | || || || | ||||||||| || |||| | Sbjct 9980 TCTTGTACTTCTCCTTGACCGCGTCGGGGATCGCGCGCACGTTCTGCACCGAGCCGTGGT 9921 Query 133153 CGGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGA 133212 | || ||||| |||||||| || || || | ||| |||| ||||| ||| | || | Sbjct 9920 CATGCAGAATCTGGTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCA 9861 Query 133213 CGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCG 133272 ||| |||| ||| || | ||||||||||||||| ||||| | | || | || | Sbjct 9860 TGAGGTACTTGTTCACGATCGTAAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGG 9801 Query 133273 ACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCA 133332 ||||||||| |||| || |||||||||||||| |||||||| |||| |||||| |||| Sbjct 9800 TCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGAATCTGCGCGGTCGACGCCGTTGGCA 9741 Query 133333 TGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGT 133392 || ||| | || || ||||| | |||||||||| || | | || || | | Sbjct 9740 TGGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCTTGACGCTGGCCTTGAGCGCCG 9681 Query 133393 TCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAAT 133452 ||||||||| || | |||| || | | | || | | ||| | | Sbjct 9680 CCCAGTCCCAGAG-----------GCCCGACGTCGGTGT-GACGCCCCACATGTCGTACT 9633 Query 133453 GCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGG 133512 | || || ||| |||||||||| | || || |||| || |||| |||| Sbjct 9632 GGAAGATGCCCTTGCTCACCGGGGAGCCCTCATAGCTGGCATACGGGCCGTGCTCCTTGG 9573 Query 133513 CCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGA 133572 | ||||| | ||||||| || | ||||| | || || ||| | ||||| Sbjct 9572 CGAGCTCCATGGACGCCTCCATCGCACCGAAGTACAGAGTCTCGAAGATGTTCTTGTTGA 9513 Query 133573 CGAACCTGGCATCGTCGCTATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAAC 133632 | ||| |||||||| ||| | ||| | | | |||| ||||||||||| | || Sbjct 9512 GCTCGCGGGCCTCGTCGCTCTCGAACGCGTGGCCCATGAGAATGAACGCGTCGGCGAGAC 9453 Query 133633 CCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGG 133692 |||| | |||| |||||| || || || ||||| | ||| | ||| | ||| Sbjct 9452 CCTGCACACCGATGCCGATCGGGCGGTGGCGCAGGTTGCTGCGCTCGGCCTCCGGGATGG 9393 Query 133693 GATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCG 133729 | |||| ||||| |||||||| |||||| || ||||| Sbjct 9392 GGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCG 9356 >seq200 Length=35225 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| || | ||||| ||||| Sbjct 30896 CACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTC 30955 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| || ||||||||||| ||||| |||||||||||||| Sbjct 30956 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTG 31015 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | | | |||| |||||| |||| || | ||| || Sbjct 31016 GATCTTCTGCTTGACATTGTCAATGCTATCCGAAGGCTCGACGTCGAGCGTGATCGTCTT 31075 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||||| || || || |||||||| Sbjct 31076 GCCGGTCAGAGTCTTGACGAAGATCTGCAT 31105 >seq3296 Length=2747 Score = 129 bits (142), Expect = 5e-25 Identities = 304/456 (67%), Gaps = 6/456 (1%) Strand=Plus/Plus Query 132916 TGCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCG 132975 |||| | || |||||||| || || || |||| ||| ||||| ||||| || || Sbjct 115 TGCGGAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCATGCGTAGAAGTGCAT---CG 171 Query 132976 ACACCACCGAG-TAA--GTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTA 133032 || | | | | | || || ||||||| | |||||||| || ||||| | Sbjct 172 ACGTGAGCTTGCTGATCGTTGGATCGGCGATGTGCACGTTCAGCGACTGGCTCTGGCAGA 231 Query 133033 TGAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCG 133092 || | | | | |||||||||||||||| | | ||| ||||||||||| | | Sbjct 232 TGTAGGCACCGCGGTCGGCGGCCATGTCCAGCACGGCCTTCTGCTTGATCTCCCACACGG 291 Query 133093 TCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTT 133152 ||||| | | |||||| | || || | | |||||| || || |||| | Sbjct 292 TCTTGTACTTCTCCTTGACCGCGTCGGGGATCACACGCACGTTCTGAACCGAGCCGTGGT 351 Query 133153 CGGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGA 133212 | || |||| |||||||| || || || | || | |||||||| ||| | || | Sbjct 352 CATGCAGGATCTGGTTGCGCACCTCGGGCGTCCAGATTCCCAGATCGATGAGCTCCTTCA 411 Query 133213 CGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCG 133272 ||| |||| ||| || | ||||||||||||||| ||||| | | || | || | Sbjct 412 TGAGGTACTTGTTCACGATCGTAAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGG 471 Query 133273 ACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCA 133332 ||||||||| || | || ||||||||||| || |||||||| |||| ||||| |||| Sbjct 472 TCGTGAACGGCTCAATCGACTCGTTGTTGCCAAGAATCTGCGCAGTCGATGCCGTTGGCA 531 Query 133333 TGTACGCCACCAACAAAGAGTTTCTTACGCCGTACT 133368 | ||| | || || ||||| | || || |||| Sbjct 532 TAGGCGCGAGCAGCAGCGAGTTGCGCACACCATACT 567 >seq2944 Length=3149 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| || || ||||| || Sbjct 3053 CAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTC 2994 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || || || |||| || |||||||| || || || |||||||||||||| Sbjct 2993 CTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 2934 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || || | |||| | ||||| ||| || || | || | ||| Sbjct 2933 CTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 2874 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || || || |||||||| Sbjct 2873 CTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 2841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433750233836104