Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2944 123 3e-23 seq1990 86.0 7e-12 >seq2944 Length=3149 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| || |||||| || || ||||| || | ||| || || | Sbjct 3056 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCC 2997 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || || || ||||||||||| | ||| | || |||||| Sbjct 2996 GTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 2937 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| || || || || | ||| | | | || ||| || ||||| || | ||||| Sbjct 2936 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGA 2878 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| |||||||| || ||||| ||||| Sbjct 2877 TCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 2841 >seq1990 Length=4996 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||| |||||||||||||||| ||||| ||||||| Sbjct 11 CTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTA 70 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 71 TACTAACGAGGA 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571709226269360