Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq200 123 2e-23 seq3296 100 2e-16 seq2944 93.3 4e-14 >seq200 Length=35225 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 ||||||||||| || || || || ||| | ||||| || ||| |||| || || || || Sbjct 31111 GTAAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAG 31052 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | |||| | | ||| || |||| || || || || ||||||||||| || || || Sbjct 31051 CCTTCGGATAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCG 30992 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||| || || || || || |||||||| ||| | ||||| |||||| |||| || Sbjct 30991 GATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGAC 30932 Query 22393 TACAACATTCAAAAAGAATCCAC 22415 |||||||| || || || || || Sbjct 30931 TACAACATCCAGAAGGAGTCGAC 30909 >seq3296 Length=2747 Score = 100 bits (110), Expect = 2e-16 Identities = 257/387 (66%), Gaps = 11/387 (3%) Strand=Plus/Plus Query 130012 GCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCT 130071 || |||||||| ||||| || | ||| || | ||||| |||||| |||| ||| || || Sbjct 1308 GCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCACGGGCG 1367 Query 130072 TTTCTATC---CTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCG 130128 | || |||| ||| ||| || || || ||||| ||| | || || ||| Sbjct 1368 ---CGATGGAGCTCGTTACCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATATCCGCG 1424 Query 130129 TGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACG 130185 ||||||||||| | || || || | | |||||| || || ||| || ||||| ||| Sbjct 1425 TGCCACGGTTCGAGGTACATCGCGAACGAGCCCTTTCGCTTGCCGCCACCCTGGTCCACG 1484 Query 130186 TGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTT 130245 | |||| | | | ||| | || || | ||| | | | | ||||| | || |||||| Sbjct 1485 TAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGGCACGAGGCCGTTTGACGAGCCGTTC 1544 Query 130246 GTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCG 130305 |||| ||| | | || |||| ||| || ||||| | ||| ||||||||| Sbjct 1545 GTGCCGCGGATGTACGAGTTGGTGGCACGAATGTTGTGCACGCTCACACCGATGCCGCCG 1604 Query 130306 CCAAATTTTGATATCAACGCGCAATCGCGT-AGCGTTTCATAAATGCCAACGATACTGTC 130364 | | || || || | ||||| | || | ||||| || || ||||| |||| ||| Sbjct 1605 GCCCACTTCGAGATGCAAGCGCACT-GCTTCAGCGTGTCGTAGATGCCCTCGATCGAGTC 1663 Query 130365 TTCTTTAATGTTTAGGAGGAAACACGA 130391 || || ||| || ||||| || || Sbjct 1664 GTCCTTCATGGCAAGCAGGAAGCAAGA 1690 >seq2944 Length=3149 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || || || | || || || ||| |||| || || ||||| | Sbjct 2839 AGATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGT 2898 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || | | ||| | | || || || ||||| ||||||||||| || || || || | Sbjct 2899 CGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACC 2958 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || || || || ||||||||||| ||| | ||||| |||||| | || || |||| Sbjct 2959 AGCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACA 3018 Query 22397 ACATTCAAAAAGAATCCAC 22415 |||| || || || || || Sbjct 3019 ACATCCAGAAGGAGTCGAC 3037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419650439774530