Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq273 150 4e-31 seq3341 138 2e-27 seq10076 89.7 1e-12 seq8991 89.7 1e-12 seq192 87.8 4e-12 seq3 87.8 4e-12 >seq273 Length=27858 Score = 150 bits (166), Expect = 4e-31 Identities = 444/676 (66%), Gaps = 24/676 (4%) Strand=Plus/Plus Query 279691 TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTC 279750 |||| || ||| | || ||||||||||||||||||||||| | | | || ||||| | Sbjct 23326 TGCCTGTCGGTGCCCTTTCGGGTGGTTGGAAGATGAAGCTTGAGTTGGCCCGTGCCATGC 23385 Query 279751 TACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACG 279810 | || || ||| | || ||||| |||||||| || |||||| |||| | ||||| Sbjct 23386 TCATGAAGGCTGATATTCTTCTGCTCGATGAGCCGACGAACCACTTGGATGTCCACAACG 23445 Query 279811 TAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 | ||||| | | |||||| || || || | ||| || | || ||||| || || | Sbjct 23446 TCAAGTGGCTCGAGGACTACCTGACGAGCCTCACGAACGTGACGTCGCTCATCGTGTCGC 23505 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 ||||||| || ||||| || | || ||| | |||||| ||||| ||| || | | Sbjct 23506 ACGACTCCGGTTTCCTCGACACGGTCTGCACGAACATCATCCACTACGAG---AACCGCA 23562 Query 279931 AGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGC 279988 |||| | | ||| || ||||| || | ||||| ||| || || ||||| Sbjct 23563 AGCTGAAGACGTACAAGGGTAACCTTTCGGAGTTCGT--CAAGCAGAAGCCGGAGGCTAA 23620 Query 279989 CGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCT 280048 | ||||| || || ||| || || ||||| ||||||||||| || || || Sbjct 23621 GACGTACTACGAGCTTGAGGCTGCTGCCTTCAAGTTCACGTTCCCTGAGCCGGGTTTCCT 23680 Query 280049 GGAGGGCATCAC-ATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTT 280107 | | |||| | ||| || || | ||||| || | || || | | | Sbjct 23681 TGCCGATATCAAGAACAAGGGTAAGC-CGATCATTCGTCT----GACGAA--CTGTACGT 23733 Query 280108 ATCCCAA---TGGCCCCAACA-----TCT-TCAGCAGTGTCAACTCGCAGGTTTCTATGA 280158 | | | ||||| ||| || || || | ||| | | ||| | Sbjct 23734 ACCAGTACCCTGGCCGTGACAAGCCGTCGATCCGCGATATCAGTGTGACGTGTTCGCTCG 23793 Query 280159 ACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCC 280218 ||| || || | ||| |||| ||||| ||||| || ||||| || || ||||| | Sbjct 23794 CCTCGCGTATCGCTGTTGTTGGCCCCAACGGTGCCGGCAAGTCGACTCTTATCAAGATGT 23853 Query 280219 TGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGG 280278 |||| || || || |||||| || | || |||||||| || |||||| | | Sbjct 23854 TGACGGGTGAAGTTGAGCCCACTGTCGGTACGGTCTGGAAGCACCCGGCCATGCGTTTCG 23913 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338 | |||||||| |||||||| ||||||||||| ||| | ||| |||| || ||| | |||| Sbjct 23914 CCTACGTCGCCCAGCACGCCTTCCACCACATTGAGGAGCACTTGGATATCACTGCCAACC 23973 Query 280339 AATACATTCAGTGGCG 280354 | ||||| |||||||| Sbjct 23974 AGTACATCCAGTGGCG 23989 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 |||||| || |||| || ||||||||||| |||||||| | ||| || || ||| | Sbjct 22988 GGATCTCTGCAACTGCGAGTTCTCGCTCGCTTATGGTGGTATGATCCTCCTCAACAACGC 23047 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| | | | |||||||| |||| || ||||| |||||| || || ||||| Sbjct 23048 TCGCATGCGCCTGAAGCGTGGTCACCGTTACGGTCTGTGCGGTCCTAACGGTTGTGGTAA 23107 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTG 279528 | || || ||||| ||||| | || |||||||| || || || ||| ||||| || Sbjct 23108 GTCGACGCTTATGCGTGCCATCTCCAAGGGTCAGCTCGAGGGCTTCCCT-ACGCAGGATG 23166 Query 279529 AGGTAAGGACAGTGTATGTAGAGCACGACATC 279560 || | | ||| || | || |||||| || || Sbjct 23167 AGCTCAAGACGGTCTTCGTCGAGCACAACCTC 23198 >seq3341 Length=2704 Score = 138 bits (152), Expect = 2e-27 Identities = 385/583 (66%), Gaps = 16/583 (3%) Strand=Plus/Minus Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTG--GTGCAGACCCTCG 251856 |||||||| | ||||| |||||||| || | ||| || || | ||| || ||||| Sbjct 2101 AGCTTGTTGGCGAGCTTCGAGTACAGCAGGCACGCGAA---GTCGCAGTGGAGGCCCTCA 2045 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 || || ||||| |||||| || | | ||||| ||||| | ||||| ||| | ||| Sbjct 2044 TCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCGGGCATGAGGCCACGCTTCTTAAGC 1985 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 |||||||| | |||||| || || ||||| | | |||||||| | | | || ||| Sbjct 1984 CAGAAGATCGAGCAAAAAGAACCCGAGAAGAAGATGCCCTCGACGGCCGCGAAGGCGACA 1925 Query 251977 AGGCGCTCAGCAAACGACTTGTCCTGCGA---CAAGAACTTCTGTGCCCATGCTGCCTTC 252033 | |||||| ||||||| | | |||| | |||| | ||||| |||||| Sbjct 1924 ATGCGCTCCGCAAACGCCGCGCGGCGCGAGTCGCACCACTTGAGAGCCCAGTGGGCCTTC 1865 Query 252034 TT-TCCAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGT 252091 || | || ||| ||||| || || || || | || |||| ||| | | || Sbjct 1864 TTCTGCA--CGCAAGGGATGGTCTCAATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGT 1807 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 ||| |||| || |||| || || || |||| ||| || |||||| ||| || | Sbjct 1806 CCTTGATGTACGTGTCAATAAGCAGCGAATACACCTCAGAGTGGATGTTCTCGATGGCGA 1747 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 ||||| | | ||||| |||||| ||| | || || || ||||| | | Sbjct 1746 TCTGGAAGCCGTAGAAGCAACGCGCCTCCGGGACCTGCACCTCGCTGCTGAAGTTCATGG 1687 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 | | |||||| | || ||||| || ||| | |||||||| | || | | |||||||| Sbjct 1686 CGAGGTTCTCGTTGACAATGCCGTCACTGGCGGCAAAGAACGCGAGCACGTGCTTGATGA 1627 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAA 252331 ||| ||||| | ||| |||| |||| |||||| | ||| || ||| | Sbjct 1626 AGTAGCGCTCGTTGTCCGTGAGGTTGT---TCCAGTCCTTGAGGTCGTGCACAAGATCGA 1570 Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 ||||| | |||||||| | | | | |||||||||||||| Sbjct 1569 TCTCTTCGGCGGTCCAGAAGCTCGCCTCGGCCTTCTTGTACAT 1527 >seq10076 Length=572 Score = 89.7 bits (98), Expect = 1e-12 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 142515 TCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 90 TCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCAC 37 >seq8991 Length=683 Score = 89.7 bits (98), Expect = 1e-12 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 142515 TCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 1 TCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCAC 54 >seq192 Length=35664 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || ||||| || || || || ||||||||||| || || |||| || || ||||| Sbjct 31771 ATCCGCGGGCTCTCGGGCGGGCAGAAGGTCAAGCTCGTGATCGCCGCGGCGATGTGGGTG 31712 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 | ||| || || |||| ||||||||||| |||||||| || ||||||| | |||||| Sbjct 31711 CGCCCGCATCTGCTCGTGCTCGACGAGCCGACCAACTACCTCGACCGCGCGGCGCTGGGC 31652 Query 280833 GCTCTG 280838 || ||| Sbjct 31651 GCGCTG 31646 >seq3 Length=104258 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || || ||||||||||| ||||| |||| || || ||||| Sbjct 16612 ATCCGCGGTCTCTCAGGCGGACAGAAGGTCAAGCTTGTGATCGCCGCGGCGATGTGGGTG 16671 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 | ||| || || |||| |||||||| || |||||||| || || |||| | |||||| Sbjct 16672 CGCCCGCATCTGCTCGTGCTCGACGAACCGACCAACTACCTCGATCGCGCGGCGCTGGGC 16731 Query 280833 GCTCTG 280838 || ||| Sbjct 16732 GCGCTG 16737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027637129211242