Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq200 134 3e-26 seq2944 122 2e-22 seq707 87.8 4e-12 >seq200 Length=35225 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| || ||||| | | Sbjct 30879 CCACCACGCAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 30938 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || ||||||||||| ||||| ||| ||| Sbjct 30939 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGG 30998 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||| || || || || || ||| | || || Sbjct 30999 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTATCCGAAGGCTCGACG 31058 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 31059 TCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 31105 >seq2944 Length=3149 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | || || || || | ||| || || ||||| || |||| Sbjct 3071 CATG-CCACCACGGAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGT 3013 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | |||||||| ||||| || | || || || || |||||||| ||||| || Sbjct 3012 CCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCG 2953 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || ||||| || ||| |||||||| || || || || || | Sbjct 2952 GCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCT 2893 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 2892 CCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 2841 >seq707 Length=13416 Score = 87.8 bits (96), Expect = 4e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 325342 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGA-TGT 325400 ||| |||||||| ||| | | |||||||||||| | || |||| || ||| ||| Sbjct 996 ATCTTTACCACCGGACAACCGTGTACCGAACTGGCCGTTTGGAGACAAG-AGATGAATGT 938 Query 325401 TATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGC 325460 | |||||||| || |||| ||||| | ||| | |||||| || | |||| ||||| Sbjct 937 TGTTGCTTCCCACGAAATCTTGTGCCATGTTGATGATGGTGCCGTTCAGACTCTGTTCGC 878 Query 325461 CATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTT 325512 |||| ||||| || ||||| | ||||| || || |||||||||||| Sbjct 877 CATGATGATACGCTGAGTGCTCCGACACGTAGCCTGCGAGCTGTGCAACCTT 826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179425236649836