Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq478 163 1e-35 >seq478 Length=18429 Score = 163 bits (180), Expect = 1e-35 Identities = 390/586 (67%), Gaps = 9/586 (2%) Strand=Plus/Minus Query 65971 GCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACG 66030 |||| || |||||||||||||| || ||| || || ||| | ||| | || | Sbjct 5511 GCCGCGTCGTGGAGATCTACGGCCCGGAGAGCTCGGGCAAGACGACGCTCGCGCTGAGCT 5452 Query 66031 CGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTC 66090 | || | || ||| || || ||| | ||| | |||||||||||| ||| | Sbjct 5451 GCATCGCGCAGGCGCAGCAGCAGGGCGGCGTCTGCGCGTTCATCGACGCCGAGCATGCCA 5392 Query 66091 TCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGC 66150 ||||| | | |||||| | |||||| || || ||||| | ||| | ||||| Sbjct 5391 TCGACGCGCACTACGCCAAGCAGCTCGGCGTCGACATCGACGAGCTCTACATCTCGCAGC 5332 Query 66151 CAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTT 66210 | ||| | ||||||||||| || ||||||| ||| ||||| ||| |||| || Sbjct 5331 CCGACTCGGGCGAGCAGGCGCTCGAGATCGCCGACACGCTCGTGCGGTCGGGCGCCGTGG 5272 Query 66211 CCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACA 66270 | | |||| || ||| ||||| || || |||||||| || ||||| ||||| || | Sbjct 5271 ACGTGGTCGTCGTCGACAGCGTGGCCGCGCTCGTGCCGCGCGCCGAGCTGGAAGGCGAGA 5212 Query 66271 TCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGA 66330 | || ||| ||| ||| ||||| || || || ||| ||||| |||||||||| | Sbjct 5211 TGGGCGACCAGCAGATCGCGCTGCAGGCGCGGCTCATGAGCCAGGCGCTGCGCAAGCTCA 5152 Query 66331 CCGGCACGAT-TGCCAG--CACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGA 66387 | ||| || | || || || | || ||||| | | |||| ||| | ||| ||| Sbjct 5151 CGGGCTCGCTGAGCAAGTCCAACTGCATGCTCA---TCTTTCTGAACCAGATCCGCCAGA 5095 Query 66388 AGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCT 66447 | | |||| | | || |||| || ||| ||| | || || | ||| ||||||| Sbjct 5094 AAGTGGGCATCAT---CTTCGGCTCGCCCGAGGTCACGTCGGGCGGCACGGCGCTGCGCT 5038 Query 66448 TCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGG 66507 |||||| || ||||| | || | ||| | | || | ||||||||||| ||| Sbjct 5037 ACTACGCGTCCGTGCGGCTCGACATTCGCCGCAAGGCGGCGATCAAGGAAGGCGACAAGG 4978 Query 66508 CTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 66553 ||||||||| | ||| ||||| | |||||||||||| || Sbjct 4977 TCGTCGGCAACGAGATCGTCGTCAAGGTGGCCAAGAACAAGCTCGC 4932 Score = 138 bits (152), Expect = 5e-28 Identities = 385/587 (66%), Gaps = 9/587 (2%) Strand=Plus/Minus Query 65971 GCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACG 66030 |||| || |||||||||||||| || ||| || || ||| | ||| | || | Sbjct 10672 GCCGCGTCGTGGAGATCTACGGCCCGGAGAGCTCGGGCAAGACGACGCTCGCGCTGAGCT 10613 Query 66031 CGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTC 66090 | || | || ||| || || ||| | ||| | |||||||||||| ||| | Sbjct 10612 GCATCGCGCAGGCACAGCAGCAAGGCGGCGTCTGCGCGTTCATCGACGCCGAGCATGCCA 10553 Query 66091 TCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGC 66150 ||||| | | |||||| | |||||| || || ||||| | ||| | |||| Sbjct 10552 TCGACGCGCACTACGCCAAGCAGCTCGGCGTCGACATCGACGAGCTCTACATCTCCCAGC 10493 Query 66151 CAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTT 66210 | ||| | ||||||||||| || ||||||| ||| || || ||| |||| || Sbjct 10492 CCGACTCGGGCGAGCAGGCGCTCGAGATCGCGGACACGCTTGTGCGGTCGGGCGCCGTCG 10433 Query 66211 CCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACA 66270 | | |||| || ||| ||||| || || |||||||| || ||| | ||||| || | Sbjct 10432 ACGTGGTCGTCGTCGACAGCGTGGCCGCGCTTGTGCCGCGCGCCGAGTTGGAAGGCGAGA 10373 Query 66271 TCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGA 66330 | || ||| ||| ||| ||||| || || || ||| ||||| |||||||||| | Sbjct 10372 TGGGCGACCAGCAGATCGCGCTGCAGGCGCGGCTCATGAGCCAGGCGCTGCGCAAGCTCA 10313 Query 66331 CCGGCACGAT-TGCCAG--CACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGA 66387 | ||| || | || || || | || ||||| | | |||| ||| | ||| ||| Sbjct 10312 CGGGCTCGCTGAGCAAGTCCAACTGCATGCTCA---TCTTTCTGAACCAGATCCGCCAGA 10256 Query 66388 AGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCT 66447 | |||||| | | || ||| || ||| ||| | || || | ||| ||||||| Sbjct 10255 AAGTCGGCATCAT---CTTTGGCTCGCCCGAGGTCACGTCGGGCGGCACGGCGCTGCGCT 10199 Query 66448 TCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGG 66507 |||||| || || || | || | ||| | | || | || || ||||| ||| Sbjct 10198 ACTACGCGTCCGTCCGGCTCGACATTCGCCGCAAGGCGGCGATCAAAGAGGGCGACAAGG 10139 Query 66508 CTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCG 66554 ||||||||| | ||| ||||| | |||||||||||| ||| Sbjct 10138 TCGTCGGCAACGAGATCGTCGTCAAGGTGGCCAAGAACAAGCTCGCG 10092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242425594652504