Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq81 226 3e-54 seq3296 170 2e-37 seq200 145 7e-30 seq2944 116 4e-21 >seq81 Length=54637 Score = 226 bits (250), Expect = 3e-54 Identities = 1091/1699 (64%), Gaps = 68/1699 (4%) Strand=Plus/Minus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGC----GGCCGGTTTTGTGCGCAGATAGTACATGC 145774 ||| || |||||||| |||| | || |||||| | ||| || |||||||||| Sbjct 10195 GTCCACCGTGAACTGGATCGCGTCGGCCTTCGGCCGGCT----GCGGAGGTAGTACATGC 10140 Query 145775 CGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACATGACCGAGTA---CG 145831 |||||||||| |||| ||||| ||| ||||| || |||| ||| | | || Sbjct 10139 CGGTCTTGAGGCCCTTCTTCCACGCGTAGAAGTGCAT---CGACGTGAGCTTGCTGATCG 10083 Query 145832 TGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCC-CGGTCG 145890 | || ||||||| || || || || |||||||| ||| | || ||| |||||| Sbjct 10082 TCGGCTCGGCGATGTGCACGTTCAGCGACTGGCTCTGGCAGATGTA-GGCGCCGCGGTCG 10024 Query 145891 GCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTG 145950 || |||||||| | || | ||| || || ||||| |||| || | |||||| Sbjct 10023 GCCGCCATGTCCAGCACGGCCTTCTGCTTGATCTCCCACACGGTCTTGTACTTCTCCTTG 9964 Query 145951 ACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTG 146010 || | ||| || || | ||||||||| || || | || || || | |||| Sbjct 9963 ACCGCGTCGGGGATCGCGCGCACGTTCTGCACCGAGCCGTGGTCATGCAGAATCTGGTTG 9904 Query 146011 CGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACC 146070 |||| || || || | ||| | || | ||| |||| ||||| |||| ||| || Sbjct 9903 CGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATGAGGTACTTGTTCACG 9844 Query 146071 ACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAAC 146130 | | ||||||||||||||| ||||| | |||| |||| | ||||||||||||| | Sbjct 9843 ATCGTAAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATC 9784 Query 146131 GACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAA 146190 ||||||||||| ||||| |||||||| |||| || || |||||| ||| | ||||| Sbjct 9783 GACTCGTTGTTGCCGAGAATCTGCGCGGTCGACGCCGTTGGCATGGGCGCGAGCAGCAGC 9724 Query 146191 GAGTTTCTCACGCCGT-GTCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATG 146249 ||||| | |||||||| | |||| | | || || | ||| | ||| | Sbjct 9723 GAGTTGCGCACGCCGTACTGCTTGACGC-TGGCCTTGAGCGCCGCCCAGTCCCAGAGGCC 9665 Query 146250 ATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCC---GCGGAACAGGGGGCT 146306 ||| || || | ||||||| || | |||| || | | ||| || Sbjct 9664 CGACGTCGGTGTGACGCCCCACATGTCGTACTGGAAGATGCCCTTGCTCACCGGGGAGC- 9606 Query 146307 ATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGC 146366 ||| || |||| || |||| |||||| || || | || |||| || Sbjct 9605 --CCTCATAGCTGGCATACGGGCCGTGCTCCTTGGCGAGCTCCATGGACGCCTCCATCGC 9548 Query 146367 CGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGT 146425 ||||| | ||||| ||| | | ||||| |||| | |||||| ||||| ||| Sbjct 9547 ACCGAAGTACAGAGTCTCGAAGATGTTCTTGTTGA-GCTCGCGGGCCTCGTCGCTCTCGA 9489 Query 146426 AGGGGATATCGAGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGC 146485 | | | | | || | || ||||||||||||||||| | |||| || | |||| Sbjct 9488 ACGCGTGGCCCATGAGAATGAACGCGTCGGCGAGACCCTGCACACCGATGCCGATCGGGC 9429 Query 146486 GGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCT 146545 |||| | ||| ||| | | || ||| |||| |||| |||| ||||||||| || Sbjct 9428 GGTGGCGCAGGTTGCTGCGCTCGGCCTCCGGGATGGGGTAGTAGTTGATGTCGATGACCT 9369 Query 146546 TGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGACATAGTCAAATGTTT 146605 |||| || || ||| || | || || | | ||| | ||||||| || | Sbjct 9368 TGTTCAGGTTGCGCGTCACGACCTTGGTGATGTCGTAGAGCTTCTTAAAGTCAAACGTCT 9309 Query 146606 TAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCT 146665 | || | |||| || ||||| | ||||| || || | ||| || ||||| || Sbjct 9308 T-GTCGT--CGTTCACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACGGCGACCT 9252 Query 146666 CGTCC-TTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCC 146724 ||||| | || |||| | | |||| ||| |||||||| | ||| |||| Sbjct 9251 CGTCCGGCGACG-TGTACTCGAGCACCTCGCAGCAAAGGTTGCTCGAGCGGATCGTGCCG 9193 Query 146725 AAAtttttttGGTTACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCC 146781 | || | |||| | |||| |||||| | ||||||||| ||||||||||| Sbjct 9192 AGGTTCTGCTGGT---TCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTG 9136 Query 146782 CCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAATCT-CTGGCCTTTACTTGTCT 146840 || || |||| | | ||||| ||| | || || | || ||| | | |||| Sbjct 9135 CCCGTCTCGATCTGAGACTCGAGGAT--CGCGAACCAGAGCTGCTGCGCGCGGATCGTCT 9078 Query 146841 TTCGTAC-AGTTTATTCTTTTCGTATTTCTCGTACAATATTTCAAAACTAG-AACCGTAC 146898 | || | | | ||| ||||| | | ||||| || |||| | || || Sbjct 9077 TGCGCGCGCGGCCCTCCTTCTCGTACTGGTGGTACAGCGCCTC-GAACTCGTCGCCCCAC 9019 Query 146899 -TCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTT 146957 |||| | ||| || || || || || ||||| || ||| || || ||| Sbjct 9018 GTCGT-GTAGAGCCCCGGGGCCTCGTTCGGGCAGAAGAGGCTCCACTCGCCGTTGGCCTC 8960 Query 146958 CACGCGTTCCATAAACAAATCGGGAATCCA-AAGGCCCAGCATCAAGTCGCGAG--CCTT 147014 ||||| | ||| || | ||| || ||||| | ||| || | || ||||||| | | Sbjct 8959 GACGCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAG-AACAGATCGCGAGCACGAT 8901 Query 147015 GGCGTCCTCGGAGCCCATGTTGCGTC-TCAAGTTGAGGACATCGTAAATTTCCGGATGCC 147073 || | ||| | || || | | || | | || ||||| ||| | || |||| |||| Sbjct 8900 GGAG--CTC-GTTTCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCCGCGTGCC 8844 Query 147074 AAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTT---ACCGCCCTGATCGACGTGGC 147130 | ||||| | ||| ||||| | ||| || ||||| |||||||| || |||| || Sbjct 8843 ACGGCTCGAGGTACATGGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGC 8784 Query 147131 GCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGA------TTTTGTGG 147184 || || ||| ||||| || || | ||| | |||||||||| || || ||| Sbjct 8783 GCGCCGTGTCGTTGAACACGCGGAGCATCGGCACGAGGCCGTTCGACGAGCCGTTCGTGC 8724 Query 147185 TGCCGTTGTA----TTG--AGCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCA 147238 || | |||| ||| |||| || | | |||||||||| |||| || ||| || Sbjct 8723 CGCGGATGTACGAGTTGGTGGCGCGGATGTTGTGCACGCTCACACCGATGCCGCCGGCCC 8664 Query 147239 GATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCT 147298 || || || | ||| ||| | | || | ||||||||| ||||| ||| |||| Sbjct 8663 ACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCT 8604 Query 147299 TGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCG 147358 | ||| ||||||| || || ||| || || || |||||| || |||||||| Sbjct 8603 TCATGGCCAGCAGGAAGCAAGACGACAGCTGCGGGCGCGGCGTGCCAGCGTTAAACAGCG 8544 Query 147359 TGGGGCTGGCGTGCGTGAA 147377 | || | ||||||||||| Sbjct 8543 TCGGCGTCGCGTGCGTGAA 8525 >seq3296 Length=2747 Score = 170 bits (188), Expect = 2e-37 Identities = 332/489 (68%), Gaps = 6/489 (1%) Strand=Plus/Plus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 ||| || |||||||| |||| | || |||| |||| || |||||||||||||| Sbjct 77 GTCCACCGTGAACTGGATCGCGTCGGCCTTCGGTCGGCTGCGGAGGTAGTACATGCCGGT 136 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACATGACCGAGTA---CGTGGG 145835 |||||| |||| ||| | ||| ||||| || |||| ||| | | ||| || Sbjct 137 CTTGAGGCCCTTCTTCCATGCGTAGAAGTGCAT---CGACGTGAGCTTGCTGATCGTTGG 193 Query 145836 TTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGC 145895 ||||||| || || || || |||||||| ||| | | | | ||||||||||| Sbjct 194 ATCGGCGATGTGCACGTTCAGCGACTGGCTCTGGCAGATGTAGGCACCGCGGTCGGCGGC 253 Query 145896 CATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTG 145955 |||||| | || | ||| || || ||||| |||| || | |||||||| Sbjct 254 CATGTCCAGCACGGCCTTCTGCTTGATCTCCCACACGGTCTTGTACTTCTCCTTGACCGC 313 Query 145956 CTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAA 146015 | ||| || | | |||||| || || || | || || || | |||||||| Sbjct 314 GTCGGGGATCACACGCACGTTCTGAACCGAGCCGTGGTCATGCAGGATCTGGTTGCGCAC 373 Query 146016 TTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTG 146075 || || || | || || || | ||| |||| ||||| |||| ||| || | | Sbjct 374 CTCGGGCGTCCAGATTCCCAGATCGATGAGCTCCTTCATGAGGTACTTGTTCACGATCGT 433 Query 146076 AAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTC 146135 ||||||||||||||| ||||| | |||| |||| | ||||||||||| | |||||| Sbjct 434 AAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCAATCGACTC 493 Query 146136 GTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTT 146195 |||||| || || |||||||| |||| || || ||||| ||| | ||||| ||||| Sbjct 494 GTTGTTGCCAAGAATCTGCGCAGTCGATGCCGTTGGCATAGGCGCGAGCAGCAGCGAGTT 553 Query 146196 TCTCACGCC 146204 | ||| || Sbjct 554 GCGCACACC 562 Score = 116 bits (128), Expect = 4e-21 Identities = 351/538 (65%), Gaps = 17/538 (3%) Strand=Plus/Plus Query 147045 GTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTT 147104 || ||||| ||| | || |||| ||||| || || | ||| |||| | ||| || Sbjct 1400 GTCGAGGAACTCGAAGATATCCGCGTGCCACGGTTCGAGGTACATCGCGAACGAGCCCTT 1459 Query 147105 TCGCTTACCGCC---CTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGA 147161 |||||| ||||| ||| || |||| |||| || ||| || || || || | ||| | Sbjct 1460 TCGCTTGCCGCCACCCTGGTCCACGTAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGG 1519 Query 147162 CACGAGGCCGCCGGAT------TTTGTGGTGCCGTTGTA----TTGA--GCGCTGACGCT 147209 |||||||||| || || ||| || | |||| ||| || | | | | Sbjct 1520 CACGAGGCCGTTTGACGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTGGCACGAATGTT 1579 Query 147210 TTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGT 147269 |||||||||| |||| || ||| || ||||| || ||||| ||| | || || Sbjct 1580 GTGCACGCTCACACCGATGCCGCCGGCCCACTTCGAGATGCAAGCGCACTGCTTCAGCGT 1639 Query 147270 CTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTG 147329 | ||||||||| ||||| ||| ||||| ||| ||||||| || || ||| || Sbjct 1640 GTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCAAGCAGGAAGCAAGACGACAGCTG 1699 Query 147330 GGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCCCAGACT 147389 ||||| ||||||||| ||||||||| || | ||||||||||| || | Sbjct 1700 CGGACGCGGCGTGCCCGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGA 1759 Query 147390 CATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGAC 147449 ||| | | ||||| || | ||| || ||| | ||| ||| | | ||||| Sbjct 1760 CATGTACTCGTACGTCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGAC 1819 Query 147450 GCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCC 147509 ||| | | ||| ||||| || || ||||| | | | || ||| | ||||| | Sbjct 1820 GCGGAGAATCATCTGCTGCGGGCGCTCCGCGACCTTGCCACCGACGCGCAGCAGATA-CG 1878 Query 147510 ATTGGTC-AGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTTGTGCTTGAT 147566 | | || || || ||||| |||||||| | |||||| | || | || ||| |||| Sbjct 1879 ACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTAGTCAAAATCGCGGTCGTGGATGAT 1936 >seq200 Length=35225 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||||| || | ||| ||||| || || || ||||| || Sbjct 30876 GCACCACCACGCAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 30935 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | |||||| || || ||||| || || ||| |||||| ||||||||||| ||| Sbjct 30936 GAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGA 30995 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| |||||||||| | || | | | |||| | |||| Sbjct 30996 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTATCCGAAGGCTCG 31055 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | ||| |||||||||||||| || || || |||||||| Sbjct 31056 ACGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 31105 >seq2944 Length=3149 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 3067 CCACCACGGAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 3008 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||||| |||||||| || || || Sbjct 3007 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 2948 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || |||||||| | |||| |||| | ||||| ||| || Sbjct 2947 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCAC 2889 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||| ||||| || || || || |||||||| Sbjct 2888 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 2841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475410680710880