Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq81 125 6e-24 seq3296 114 1e-20 >seq81 Length=54637 Score = 125 bits (138), Expect = 6e-24 Identities = 915/1446 (63%), Gaps = 57/1446 (4%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 |||||||| || || || || ||| | | ||||||||| | ||| | ||| | | Sbjct 8417 AAGGTCGCGGAGCGCCCGCAGCAGATGATTCTCCGCGTCGCTGTCGGCATCCACAAGCAC 8476 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 ||||| || |||| ||| || ||||| | ||||| |||| || |||||||||||| Sbjct 8477 GACATTGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCG 8536 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 | || || |||| ||| |||||| | || ||| |||| || || || |||| Sbjct 8537 ACGCCGACGCTGTTTAACGCTGGCACGCCGCGCCCGCAGCTGTCGTCTTGCTTCCTGCTG 8596 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||| ||| || ||||| || || | | ||||| | || Sbjct 8597 GCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCCTGCATC 8656 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG- 123196 ||||| | | ||||||||| || |||| ||||||| || | | ||| | || || Sbjct 8657 TCCAAGTGGGCCGGCGGCATCGGTGTGAGCGTGCACAACATCCG-CGCCAC-CAACTCGT 8714 Query 123197 -CATCAGAAGCACCGACGGAATCG-CCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254 |||| | |||| |||| ||| | ||| |||| | ||||| || || | ||| Sbjct 8715 ACATCCGCGGCACGAACGG-CTCGTCGAACGGCCTCGTGCCGATGCTCCGCGTGTTCAAC 8773 Query 123255 AACGCCGTGCGGCACGTCGACCAG---GGCGGCAAACGCAAAGGCGCGATGGCGATCTAT 123311 || | | ||| |||| |||||| |||||||| ||||| ||| || | || || || Sbjct 8774 GACACGGCGCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCCATGTAC 8833 Query 123312 CTAGAACCGTGGCACGTTGATGTGTACGA-TTTTTTAAATTTAAAACGCAACATGGGGGC 123370 || || |||||||||| || | | ||| || | | | || | | | || || | Sbjct 8834 CTCGAGCCGTGGCACGCGGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGAAAC 8893 Query 123371 GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCG 123430 || | || |||||| |||| ||||| | ||| | || ||| | || ||| Sbjct 8894 -GAGCTCCATCGTGCTCGCGATCTGTTCTACGCCATGTGGATCCCGGATCTCTTCATGAA 8952 Query 123431 ACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCC--GGCT-T 123487 ||||| | | | |||||| |||| ||| | || ||||| || | ||| |||| | Sbjct 8953 GCGCGTCGAGGCCAACGGCGAGTGGAGCCTCTTCTG-CCCGAACGAGGCCCCGGGGCTCT 9011 Query 123488 GAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGG-CA 123546 ||||| | ||| | |||| || | | ||||| || |||||| || || | Sbjct 9012 ACACGACG--TGGGGCGACGAGTTCGAGGCGCTGTACCACCAGTACGAGAAGGAGGGCCG 9069 Query 123547 AACAGGTTAGTCAGGTTCCG---GCACGTGAT-TTGTTCAAATTTATTATCGAAACACAA 123602 | | || | | |||| ||| | | | |||| || |||| | || Sbjct 9070 CGCGCGCAAG--ACGATCCGCGCGCAGCAGCTCTGGTTC---GCGATCCTCGAGTCTCAG 9124 Query 123603 GTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAG 123662 |||| || || |||||||||||||| ||||| ||| | |||||| | || | || ||| Sbjct 9125 ATCGAGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAG 9184 Query 123663 AGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGAT 123722 ||| | || || || | || || ||||||| ||| | |||| |||| || Sbjct 9185 CAGAACCTCGGCACGATCCGCTCGAGCAACCTTTGCTGCGAGGTGCTCGAGTACA-CGTC 9243 Query 123723 GCC-GATCAAGTGGCCGTGTGTAATTTGGCTTCGAT-TTGC-GTGAATCGTTG----CGT 123775 ||| || | || |||||||| || | || || || || || | ||| || Sbjct 9244 GCCGGACGAGGTCGCCGTGTGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTGAACGA 9303 Query 123776 CGAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAG-- 123833 ||| || | || ||| | || | | |||| | ||| || || || || | | Sbjct 9304 CGACAA-GACG--TTTGACTTTAAGAAGCTCTACGACATCACCAA---GGTCGTGACGCG 9357 Query 123834 -AATTTGAACAAAATTATCGATGTTAATTTTTATCCTTT---GGAGGAAGCGCGTTTGTC 123889 || ||||||| | ||||| | || | || || | ||||| | ||| Sbjct 9358 CAACCTGAACAAGGTCATCGACATCAACTACTACCCCATCCCGGAGGCCGAGCG---CAG 9414 Query 123890 TAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAAT 123949 || || ||| | ||| |||| | || | || || | ||||||||||| | | Sbjct 9415 CAACCTGCGCCACCGCCCGATCGGCATCGGTGTGCAGGGTCTCGCCGACGCGTTCATTCT 9474 Query 123950 GCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAAC 124009 || || ||| ||| |||||||| || ||| || | | | || ||| || Sbjct 9475 CATGGGCCACGCGTTCGAGAGCGACGAGGCCCGCGAGCTCAACAAGAACATCTTCGAGAC 9534 Query 124010 AATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGA 124069 | || | ||| || |||||||| | || || || || |||||| |||| | Sbjct 9535 TCTGTACTTCGGTGCGATGGAGGCGTCCATGGAGCTCGCCAAGGAGCACGGCCCGTATGC 9594 Query 124070 AAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTAC 124129 || || | |||| ||||| |||| || || || ||||||||||||||| | || Sbjct 9595 CAGCTATGAGGGCTCCCCGGTGAGCAAGGGCATCTTCCAGTACGACATGTGGGGCGTCAC 9654 Query 124130 ACCGA---CAAATTTGTGGGACTGG--AGCGTTTTAAAACAACGCATATCGACGCACGGT 124184 ||||| | | ||||||||| ||| | | || || | | | |||| Sbjct 9655 ACCGACGTCGGGCCTCTGGGACTGGGCGGCGCTCAAGGCCA--GCGTCAAGCAGTACGGC 9712 Query 124185 TTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGA 124244 |||| ||||||||| || | ||| |||||| ||||| | || || || ||| | || Sbjct 9713 GTGCGCAACTCGCTGCTGCTCGCGCCCATGCCAACGGCGTCGACCGCGCAGATTCTCGGC 9772 Query 124245 AACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGC 124304 |||||||| || ||||||||||||| | ||| ||||| || || ||| | |||||| Sbjct 9773 AACAACGAGTCGATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTCGCCGGC 9832 Query 124305 GATTTT 124310 || ||| Sbjct 9833 GAGTTT 9838 >seq3296 Length=2747 Score = 114 bits (126), Expect = 1e-20 Identities = 908/1443 (63%), Gaps = 51/1443 (4%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 |||||||| || || || || ||| | | ||||||||| | ||| | ||| | | Sbjct 1855 AAGGTCGCGGAGCGCCCGCAGCAGATGATTCTCCGCGTCGCTGTCGGCATCCACAAGCAC 1796 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 ||||| || |||| ||| || ||||| | ||||| |||| || |||||||||||| Sbjct 1795 GACATTGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCG 1736 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 | || || |||| ||| |||||| | || ||| |||| || || || |||| Sbjct 1735 ACGCCGACGCTGTTTAACGCGGGCACGCCGCGTCCGCAGCTGTCGTCTTGCTTCCTGCTT 1676 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||| ||| || ||||| || || || | ||||| | || Sbjct 1675 GCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTGAAGCAGTGCGCTTGCATC 1616 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG- 123196 || || | | ||||||||| || |||| ||||||| || | | | | | || || Sbjct 1615 TCGAAGTGGGCCGGCGGCATCGGTGTGAGCGTGCACAACATTCGTGCCACC--AACTCGT 1558 Query 123197 -CATCAGAAGCACCGACGGAATCGCCTC-CGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254 |||| | |||| |||| ||| | ||| |||| | ||||| || || | || Sbjct 1557 ACATCCGCGGCACGAACGGC-TCGTCAAACGGCCTCGTGCCGATGCTCCGCGTGTTTAAC 1499 Query 123255 AACGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCAAAGGCGCGATGGCGATCTAT 123311 || | | ||| |||| |||||||| |||||| || || ||| || | ||||| || Sbjct 1498 GACACGGCGCGCTACGTGGACCAGGGTGGCGGCAAGCGAAAGGGCTCGTTCGCGATGTAC 1439 Query 123312 CTAGAACCGTGGCACGTTGATGTGTACGA-TTTTTTAAATTTAAAACGCAACATGGGGGC 123370 || ||||||||||||| ||| | | ||| || | | | || | | | || || | Sbjct 1438 CTCGAACCGTGGCACGCGGATATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGTAAC 1379 Query 123371 GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCG 123430 | | | ||||| ||| |||| ||||| | ||| | || ||| | || ||| Sbjct 1378 G-AGCTCCATCGCGCCCGTGATCTGTTCTACGCCATGTGGATCCCGGATCTCTTCATGAA 1320 Query 123431 ACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCT---T 123487 || || | | | |||||| |||| ||| | || ||| | || | |||| | | Sbjct 1319 GCGAGTCGAGGCCAACGGCGAGTGGAGCCTCTTCTGCCCCAA-CGAGGCACCGGGTCTCT 1261 Query 123488 GAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAA 123547 |||||| || | |||| || | | ||||| || |||||| || ||| Sbjct 1260 ACACGACGTGG--GGTGACGAGTTCGAGGCGCTGTACCACCAGTACGAGAAGGAGGGCCG 1203 Query 123548 ACAG-GTTAGTCAGGTTCCG-GCACGTGATTT---GTTCAAATTTATTATCGAAACACAA 123602 | | || | | |||| |||| | | |||| || |||| |||| Sbjct 1202 CGCGCGCAAGAC--GATCCGCGCACAGCAGCTCTGGTTCGCG---ATCCTCGAGTCACAG 1148 Query 123603 GTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAG 123662 |||| || || ||||| |||||||| ||||| ||| | |||||| | || | || ||| Sbjct 1147 ATCGAGACGGGCACGCCATACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAG 1088 Query 123663 AGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGAT 123722 ||| | || || || | || || ||||||| ||| | |||| |||| || Sbjct 1087 CAGAACCTCGGCACGATCCGCTCGAGCAACCTTTGCTGCGAGGTGCTCGAGTACA-CGTC 1029 Query 123723 GCC-GATCAAGTGGCCGTGTGTAATTTGGCTTCGATTT-GC-GTGAATCGTTGCGT-CGA 123778 ||| || | || |||||||| || | || || || || || | ||| | ||| Sbjct 1028 GCCCGACGAGGTCGCCGTGTGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTGAACGA 969 Query 123779 AAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAG---AA 123835 || | ||| | ||| | | |||| | ||| || || || || | | || Sbjct 968 CGACAAAACGTTTGACTTCAAGAAGCTCTACGACATCACCAAG---GTCGTGACGCGCAA 912 Query 123836 TTTGAACAAAATTATCGATGTTAATTTTTATCCTTTG---GAGGAAGCGCGTTTGTCTAA 123892 |||||||| | ||||| | || | || || | |||| | ||| || Sbjct 911 CTTGAACAAGGTCATCGACATCAACTACTACCCAATCCCAGAGGCCGAGCGCAGC---AA 855 Query 123893 TTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCT 123952 || ||| | ||| |||| | || | || || | |||||||||||| | | | Sbjct 854 CATGCGCCACCGCCCGATCGGCATTGGTGTGCAGGGTCTCGCCGACGCGTTTATTCTCAT 795 Query 123953 GCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAAT 124012 | || |||| ||| || |||| ||| || || | | | || ||| || | Sbjct 794 GGGCCATCCGTTCGAGAGTAACGAGGCACGCGAACTCAACAAGAACATCTTCGAGACGCT 735 Query 124013 TTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAG 124072 || | ||| || |||||||| | ||||| || || |||||| |||| | || Sbjct 734 GTACTTCGGTGCGATGGAGGCGTCCATGGAACTCGCCAAGGAGCACGGCCCGTATGCCAG 675 Query 124073 TTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACC 124132 || | |||| ||||| |||| ||| || || || |||||||||||| | || || Sbjct 674 CTATGAGGGCTCCCCGGTGAGCAAAGGCATCTTCCAATACGACATGTGGGGCGTCACGCC 615 Query 124133 GACAAATT---TGTGGGACTGGA--GCGTTTTAAAACAACGCATATCGACGCACGGTTTG 124187 ||| | ||||||||| ||| | | || || | | | | ||| || Sbjct 614 GACGTCGGGCCTCTGGGACTGGGCGGCGCTCAAGGCCAGCGTCAAGCA--GTATGGTGTG 557 Query 124188 CGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAAC 124247 || ||||||||| || | ||| ||||| |||||| | ||||| || ||| | || ||| Sbjct 556 CGCAACTCGCTGCTGCTCGCGCCTATGCCAACGGCATCGACTGCGCAGATTCTTGGCAAC 497 Query 124248 AACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGAT 124307 ||||| || | ||||||||||| | ||| ||||| || || ||| | |||||||| Sbjct 496 AACGAGTCGATTGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTCGCCGGCGAG 437 Query 124308 TTT 124310 ||| Sbjct 436 TTT 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451917534093520