Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq81 269 4e-67 seq3296 241 2e-58 seq3341 140 5e-28 >seq81 Length=54637 Score = 269 bits (298), Expect = 4e-67 Identities = 431/607 (71%), Gaps = 19/607 (3%) Strand=Plus/Minus Query 203836 CGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTA 203892 || |||||||||||||||||| || |||| |||| |||| ||| | || ||||| Sbjct 10201 CGCCTTGTCCACCGTGAACTGGATCGCGT---CGGCCTTCGGCCGGCTGCGGAGGTAGTA 10145 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 |||||||||||| |||||||||| |||| |||| | |||||| || | || ||||| | Sbjct 10144 CATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAGAAGTGCATCGACGTGAGCTTGCTGAT 10085 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011 | || ||||| ||||| | |||||| |||||||| ||| |||| | |||||| || | Sbjct 10084 CGTCGGCTCGGCGATGTGCACGTTCAGCGACTGGCTCTGGCAGATGTA-GGCGCCGCGGT 10026 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071 | || ||||| | | | || ||||||| ||||||||||| |||||| || || Sbjct 10025 CGGCCGCCATGTCCAGCACGGCCTTCTGCTTGATCTCCCACACGGTCTTGTACTTCTCCT 9966 Query 204072 TG-GTGTGTTGAGGCACATC-TTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC 204128 || | || | || ||| | ||||| ||| | |||||||| ||| || | || Sbjct 9965 TGACCGCGTCGGGG---ATCGCGCGCACGTTCTGCACCGAGCCGTGGTCATGCA-GAATC 9910 Query 204129 T-CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGG 204187 | | | | ||| | ||| ||||| | | ||| |||||| || |||| | Sbjct 9909 TGGTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATGAGGTACTTG 9850 Query 204188 TTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGT 204247 || | |||| ||| || |||| ||||| | ||| || ||| |||| | ||||| || Sbjct 9849 TTCACGATCGTAAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGC 9790 Query 204248 TCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGG 204307 |||| || |||||||||||||| |||||| ||||| ||||| |||||||| || || Sbjct 9789 TCGATCGACTCGTTGTTGCCGAGAATCTGCGCGGTCGACGCCGTTGGCATGGGCGCGAGC 9730 Query 204308 AGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---G 204364 ||||| ||||||||||| ||||| | | ||| ||| ||| || | | |||||| | Sbjct 9729 AGCAGCGAGTTGCGCACGCCGTACTGCTTGACGCTGGCCTTGAGCGCCGCCCAGTCCCAG 9670 Query 204365 TGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGG 204424 | || | ||| | ||||||||||||||| |||| |||||||| | || || ||| Sbjct 9669 AGGCCCGACGTCGGTGTGACGCCCCACATGTCGTACTGGAAGATGCCCTTGCTCACCGGG 9610 Query 204425 CTGCCCT 204431 ||||| Sbjct 9609 GAGCCCT 9603 Score = 138 bits (152), Expect = 2e-27 Identities = 448/680 (66%), Gaps = 32/680 (5%) Strand=Plus/Minus Query 204931 CTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTC 204990 ||||||||| ||||||||||| || ||||||||||||| |||| ||||| | || |||| Sbjct 9187 CTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTC 9128 Query 204991 CATCTGAGA-TCGCAGAATGTGGGTCCACAATT----CGCGAGCCTCCACTTGCTT-CAC 205044 |||||||| ||| || || | ||| | | |||| | || ||||| | | Sbjct 9127 GATCTGAGACTCG-AGGATCGCGAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGC 9069 Query 205045 GTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTC 205104 | | ||| | |||||| | |||||||||| | || || || |||||| Sbjct 9068 GGCCCTCCTT-----CTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCC--CACGTC 9016 Query 205105 CATCAG---CCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGT---CTTT 205158 || ||| || | | || ||| || |||| | || || ||| | | Sbjct 9015 GTGTAGAGCCCCGGGGCCTCGTTCGGG---CAGAAGAGGCTCCA-CTCGCCGTTGGCCTC 8960 Query 205159 CACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAAT 205218 || | || ||| || || || |||||||| | |||| |||||||| || || | | Sbjct 8959 GACGCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCGCGAGCACGATG 8900 Query 205219 TCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACG 205277 |||| ||| ||||||| || | ||| || || || | ||||| |||||||||| Sbjct 8899 GAGCTCGTTTCCGTGGTTCTTCTTGAGGTCGAGG-AACTCGAAGATGTCCGCGTGCCACG 8841 Query 205278 GCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAG 205337 |||| | ||| ||| | | ||| | |||| || ||||||||||| ||| | Sbjct 8840 GCTCGAGGTACATGGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGCG 8781 Query 205338 TCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGT 205397 | | ||||||| || || ||||||||||| || ||||| | | |||||||||| | Sbjct 8780 CCGTGTCGTTGAACACGCGGAGCATCGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGC 8721 Query 205398 TGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACT 205457 |||| |||| || | | |||| | | | | || || ||||| | |||| Sbjct 8720 GGATGTACGAGTTGGTGGCGCGGATGTTGTGCACGCTCACACCGATGCCGCCGGCCCACT 8661 Query 205458 TGGCGATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCC 205516 ||| ||| |||||||| |||| || ||| ||||||||| |||| || |||||| | Sbjct 8660 TGGAGATGCAGGCGCACTGCTTG-AGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTC 8602 Query 205517 AGTGTCACCAGATAGCACGAAGCCAGCT--TGGCAAAGTTGGTGCCCGCGTGGAAGAGCG 205574 | | || ||| |||| || | ||||| ||| | ||||| |||| || |||| Sbjct 8601 ATGGCCAGCAGGAAGCAAGACGACAGCTGCGGGCGCGG--CGTGCCAGCGTTAAACAGCG 8544 Query 205575 TGGGGCTGGCGTGGCTGAAG 205594 | || | ||||| ||||| Sbjct 8543 TCGGCGTCGCGTGCGTGAAG 8524 >seq3296 Length=2747 Score = 241 bits (266), Expect = 2e-58 Identities = 427/609 (70%), Gaps = 23/609 (4%) Strand=Plus/Plus Query 203836 CGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGC---AGGCCTGCTTCTCAGATAGTA 203892 || |||||||||||||||||| || |||| |||| || | ||| | || ||||| Sbjct 71 CGCCTTGTCCACCGTGAACTGGATCGCGT---CGGCCTTCGGTCGGCTGCGGAGGTAGTA 127 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA- 203951 |||||||||||| |||||||||| ||| |||| | |||||| || | || ||||| | Sbjct 128 CATGCCGGTCTTGAGGCCCTTCTTCCATGCGTAGAAGTGCATCGACGTGAGCTTGCTGAT 187 Query 203952 CGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGA 204010 |||| || ||||| ||||| | |||||| |||||||| ||| |||| |||| || || Sbjct 188 CGTT-GGATCGGCGATGTGCACGTTCAGCGACTGGCTCTGGCAGATG-TAGGCACCGCGG 245 Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCT 204070 || |||||||| | | | || ||||||| ||||||||||| |||||| || || Sbjct 246 TCGGCGGCCATGTCCAGCACGGCCTTCTGCTTGATCTCCCACACGGTCTTGTACTTCTCC 305 Query 204071 CTG-GTGTGTTGAGG--CACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAG 204126 || | || | || |||| | ||||| ||| | |||||||| ||| || | Sbjct 306 TTGACCGCGTCGGGGATCACA----CGCACGTTCTGAACCGAGCCGTGGTCATGCAGGA- 360 Query 204127 TCT-CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGG 204185 ||| | | | ||| | ||| || |||| ||| |||||| || |||| Sbjct 361 TCTGGTTGCGCACCTCGGGCGTCCAGATTCCCAGATCGATGAGCTCCTTCATGAGGTACT 420 Query 204186 GGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATG 204245 ||| | |||| ||| || |||| ||||| | ||| || ||| |||| | ||||| | Sbjct 421 TGTTCACGATCGTAAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACG 480 Query 204246 GTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCA 204305 | || | || |||||||||||| | |||||| || || ||||| ||||| || || | Sbjct 481 GCTCAATCGACTCGTTGTTGCCAAGAATCTGCGCAGTCGATGCCGTTGGCATAGGCGCGA 540 Query 204306 GGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC-- 204363 | ||||| |||||||||||||| || | | ||| ||| ||| || | | |||||| Sbjct 541 GCAGCAGCGAGTTGCGCACACCATACTGCTTGACGCTGGCCTTGAGCGCCGCCCAGTCCC 600 Query 204364 -GTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTG 204422 | | || | || | ||||||||||||||| | || |||||||||| || || | Sbjct 601 AGAGGCCCGACGTCGGCGTGACGCCCCACATGTCGTATTGGAAGATGCCTTTGCTCACCG 660 Query 204423 GGCTGCCCT 204431 || ||||| Sbjct 661 GGGAGCCCT 669 Score = 113 bits (124), Expect = 7e-20 Identities = 285/431 (66%), Gaps = 2/431 (0%) Strand=Plus/Plus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| || || || |||||||| | |||| |||||||||||||| | | || Sbjct 1319 CTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCACGGGCGCGATGGAGCTC 1378 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 || || ||||||| || | ||| || || || | || || ||||||||||| || | Sbjct 1379 GTTACCGTGGTTCTTCTTGAGGTCGAG-GAACTCGAAGATATCCGCGTGCCACGGTTCGA 1437 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 ||| || | | ||| | |||| |||||||||||||| ||| | | | Sbjct 1438 GGTACATCGCGAACGAGCCCTTTCGCTTGCCGCCACCCTGGTCCACGTAGCGCGCCGTGT 1497 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 |||| || || || ||||||||||| || ||||| | | |||||||||| | |||| Sbjct 1498 CGTTAAACACGCGGAGCATCGGCACGAGGCCGTTTGACGAGCCGTTCGTGCCGCGGATGT 1557 Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463 |||| || | | |||| | | | | || || ||||| | ||||| | || Sbjct 1558 ACGAGTTGGTGGCACGAATGTTGTGCACGCTCACACCGATGCCGCCGGCCCACTTCGAGA 1617 Query 205464 TCTGGGCGCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCA 205523 | ||||||| | ||| ||| ||||||||| |||| || |||||| || | | Sbjct 1618 TGCAAGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCAA 1677 Query 205524 CCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGG 205583 ||| |||| || | ||||| | | |||||||||| || ||||| || | | Sbjct 1678 GCAGGAAGCAAGACGACAGCTGCGGACGCGGCGTGCCCGCGTTAAACAGCGTCGGCGTCG 1737 Query 205584 CGTGGCTGAAG 205594 |||| ||||| Sbjct 1738 CGTGCGTGAAG 1748 >seq3341 Length=2704 Score = 140 bits (154), Expect = 5e-28 Identities = 357/535 (67%), Gaps = 15/535 (3%) Strand=Plus/Minus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| |||||||| ||||||||||| || ||||| || || ||||||| |||||| || | Sbjct 2079 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGA 2020 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | ||||||| ||||||| |||||| || ||||| || || | ||||| ||| Sbjct 2019 AGCTGAGGCCGGGCATGAGGCCACGCTTCTTAAGCCAGAAGATCGAGCAAAAAGAACCCG 1960 Query 160035 TAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGG 160094 || ||||| ||||| |||||||| || || || | | ||| |||| | || | Sbjct 1959 AGAAGAAGATGCCCTCGACGGCCGCGAAGGCGACAATGCGCTCCGCAAACGCCGC----G 1904 Query 160095 TGTCATGGGTC-CACCTTTTG---GCCCATTCAGCCTTCTT-TGCGATGCACGGCATGCG 160149 | | | ||| |||| ||| ||||| | |||||||| ||| | ||| || ||| Sbjct 1903 CGGCGCGAGTCGCACCACTTGAGAGCCCAGTGGGCCTTCTTCTGC-ACGCAAGGGATGGT 1845 Query 160150 CTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAG 160209 ||| | ||| | | || || |||| || |||||||| || |||| || Sbjct 1844 CTCAATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATAAG 1785 Query 160210 CTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGT 160269 | ||| |||| || | ||| | || |||||||| ||||| ||| |||||| | Sbjct 1784 CAGCGAATACACCTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAACG 1725 Query 160270 CGCCTCCAGATACTGCACCTC-CTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACC 160328 ||||||| | ||||||||| ||| |||| | | || || | || || | | Sbjct 1724 CGCCTCCGGGACCTGCACCTCGCTG-CTGAAGTTCATGGCGAGGTTCTCGTTGACAATGC 1666 Query 160329 CGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGA 160388 |||| ||| |||||||| || | |||||| |||||| | | ||||| | ||| Sbjct 1665 CGTCACTGGCGGCAAAGAACGCGAGCACGTGCTTGATGAAGTAGCGCTCGTTGTCCGTGA 1606 Query 160389 GTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 | || | ||||| | | ||| || | | ||| | |||||| ||| |||| Sbjct 1605 G---GTTGTTCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCTTCGGCGGTCCA 1554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795004498210720