Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3296 250 3e-61 seq81 212 7e-50 seq3341 107 2e-18 >seq3296 Length=2747 Score = 250 bits (276), Expect = 3e-61 Identities = 570/845 (67%), Gaps = 21/845 (2%) Strand=Plus/Plus Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603 ||||| || | |||| ||||| ||| |||||||| |||||||| |||||||| Sbjct 1071 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTAT 1130 Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTG-GTAC 106662 ||||| |||||||| ||||||||| ||| || || ||| | || |||| | | Sbjct 1131 GGCGTGCCCGTCTCGATCTGTGACTCGAGGATCGCGAACCAGA-----GCTGCTGTGCGC 1185 Query 106663 A-ATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 106718 || | ||| || || |||||| |||||||| ||| || || || ||||| | Sbjct 1186 GGATCGTCTTGCGCGCGCGGCCCTCCTTCTCGTACTGGTGGTACAGCGCCTCGAACTCGT 1245 Query 106719 CACCCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 106777 ||||| || ||| | ||||||| ||||||| || || ||||| || ||| | || Sbjct 1246 CACCCCACGTCGT-GTAGAGACCCGGTGCCTCGTTGGGGCAGAAGAGGCTCCACTCGCCG 1304 Query 106778 CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 106837 |||| || ||||||||||| || || || ||||||| || | || ||||| | Sbjct 1305 TTGGCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCACGG 1364 Query 106838 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGC 106896 ||| |||| ||| ||||| || | | || |||||||| | ||||||||| Sbjct 1365 GCGCGATGGAGCTCGTTACCGTGGTTCT-TCTTGAGGTCGAGGAACTCGAAGATATCCGC 1423 Query 106897 GTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTAC 106953 |||||| || || || || | |||| || |||||||| ||| || | || | || Sbjct 1424 GTGCCACGGTTCGAGGTACATCGCGAACGAGCCCTTTCGCTTGCCGCCACCCTGGTCCAC 1483 Query 106954 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 107013 |||||||| ||| ||||||| ||||| ||||| || | | || | ||| || || Sbjct 1484 GTAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGGCACGAGGCCGTTTGACGAGCCGTT 1543 Query 107014 TGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 || || || || ||||| || |||| | | | || | | || || || || Sbjct 1544 CGTGCCGCGGATGTACGAG--TTGGTGGCACGAATGTTGTGCACGCTCACACCGATGCCG 1601 Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131 || |||||||| ||||| || |||| | | || || | ||||| || | ||| ||| Sbjct 1602 CCGGCCCACTTCGAGATGCAAGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCGATCGAG 1661 Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191 || ||||| |||| | ||||||||| |||| |||||| | || || || || || Sbjct 1662 TCGTCCTTCATGGCAAGCAGGAAGCAAGACGACAGCTGCGGACGCGGCGTGCCCGCGTTA 1721 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAG 107251 || || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | Sbjct 1722 AACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGC 1781 Query 107252 ACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGT 107311 | | |||||||| | | ||||||||||| || || || | || ||| | || || Sbjct 1782 GCGGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATCATCTGCTGCGGG 1841 Query 107312 GTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCA 107371 ||| || ||||| ||| || | ||||| |||||| || || |||| ||| Sbjct 1842 CGCTCCGCGACCTTGCCACCGACGCGCAGCAGATACGACTTCTCGAGCGTCTTGAAGCCA 1901 Query 107372 AAGTA 107376 ||||| Sbjct 1902 AAGTA 1906 >seq81 Length=54637 Score = 212 bits (234), Expect = 7e-50 Identities = 564/846 (67%), Gaps = 23/846 (3%) Strand=Plus/Minus Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603 ||||| || | |||| ||||| ||| |||||||| |||||||| |||||||| Sbjct 9201 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTAC 9142 Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCG-GCTGGTA 106661 ||||| |||||||| |||| |||| ||| || || ||| | | | ||| || | | Sbjct 9141 GGCGTGCCCGTCTCGATCTGAGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATC 9082 Query 106662 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 106721 | ||| || || |||||| |||||||| ||| || || || ||||| || | Sbjct 9081 GTCTTGCGC--GCGCGGCCCTCCTTCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGC 9024 Query 106722 CCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCC 106780 || || ||| | |||| || || |||| || || ||||| || ||| | || Sbjct 9023 CCCACGTCGT-GTAGAGCCCCGGGGCCTCGTTCGGGCAGAAGAGGCTCCACTCGCCGTTG 8965 Query 106781 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CA 106839 |||| || ||||||||||| || || || ||||||| || | || ||||| | | || Sbjct 8964 GCCTCGACGCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCGCGAGCA 8905 Query 106840 CC---GAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCG 106895 | |||| |||| || ||||| || | | || |||||||| | ||| |||| Sbjct 8904 CGATGGAGC----TCGTTTCCGTGGTTCT-TCTTGAGGTCGAGGAACTCGAAGATGTCCG 8850 Query 106896 CGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTA 106952 ||||||| ||||| || || | |||| || ||||| || ||| | | || | | Sbjct 8849 CGTGCCACGGCTCGAGGTACATGGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCA 8790 Query 106953 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 107012 | |||||||| ||| |||| || ||||| ||||| || | | || | || || | Sbjct 8789 CGTAGCGCGCCGTGTCGTTGAACACGCGGAGCATCGGCACGAGGCCGTTCGACGAGCCGT 8730 Query 107013 TTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 107070 | || || || || ||||| || |||| | | | || | | || || || || Sbjct 8729 TCGTGCCGCGGATGTACGAG--TTGGTGGCGCGGATGTTGTGCACGCTCACACCGATGCC 8672 Query 107071 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 107130 || |||||||| ||||| || |||| | | || || | ||||| || | ||| || Sbjct 8671 GCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGA 8612 Query 107131 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 107190 ||| ||||| |||| | ||||||||| |||| |||||| | || || ||||| || Sbjct 8611 GTCGTCCTTCATGGCCAGCAGGAAGCAAGACGACAGCTGCGGGCGCGGCGTGCCAGCGTT 8552 Query 107191 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAA 107250 || || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | Sbjct 8551 AAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAG 8492 Query 107251 GACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 | | |||||||| | | ||||||||||| || || || | || ||| | || || Sbjct 8491 CGCGGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATCATCTGCTGCGG 8432 Query 107311 TGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACC 107370 ||| || |||| ||| || | || || |||||| || || |||| || Sbjct 8431 GCGCTCCGCGACCTTGCCGCCGACGCGCAGCAGGTACGACTTCTCGAGCGTCTTGAAGCC 8372 Query 107371 AAAGTA 107376 |||||| Sbjct 8371 AAAGTA 8366 >seq3341 Length=2704 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| |||||||| || || || || || || ||||||| ||||| |||||||| || Sbjct 2057 GTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCGGGCATGAGGCC 1998 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | ||| || || || ||||||||||| ||||| || Sbjct 1997 ACGCTTCTTAAGCCAGAAGATCGAGCAAAAAGAACCCGAGAAGAAGATGCCCTCGACGGC 1938 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAA-GGAGCGAGACTTTGTGTCAAACCATTTCATTG 117463 ||| || || | || |||||| || || | ||| | | | ||| |||| || | | Sbjct 1937 CGCGAAGGCGACAATGCGCTCCGCAAACGCCGCGCGGC-GCGAGTCGCACCACTTGAGAG 1879 Query 117464 CCCATTTCGCCTTCTTCT 117481 |||| | |||||||||| Sbjct 1878 CCCAGTGGGCCTTCTTCT 1861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589868983888880