Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3341 208 1e-48 seq81 179 7e-40 seq3296 161 2e-34 >seq3341 Length=2704 Score = 208 bits (230), Expect = 1e-48 Identities = 387/567 (68%), Gaps = 6/567 (1%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAA---AACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 ||| |||||||||||||||| | | || |||||||||||||||||| ||||| Sbjct 1521 TGGCAGATGTACAAGAAGGCCGAGGCGAGCTT---CTGGACCGCCGAAGAGATCGATCTT 1577 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | | ||| | | | |||| || || | | |||||| | || ||||| || Sbjct 1578 GTGCACGACCTCAAGGACTGGAACAACCTCACGGACAACGAGCGCTACTTCATCAAGCAC 1637 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 ||| | || |||||||| ||| ||| || || || |||||||| || | || ||| Sbjct 1638 GTGCTCGCGTTCTTTGCCGCCAGTGACGGCATTGTCAACGAGAACCTCGCCATGAACTTC 1697 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | ||| || |||||| | |||||| || |||||||| |||||||| |||||||| Sbjct 1698 AGCAGCGAGGTGCAGGTCCCGGAGGCGCGTTGCTTCTACGGCTTCCAGATCGCCATCGAG 1757 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAG 25776 || | ||||||||||||||| | |||| | |||||||| | ||| | ||| Sbjct 1758 AACATCCACTCTGAGGTGTATTCGCTGCTTATTGACACGTACATCAAGGACCAGACGGAG 1817 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836 | | | || | | || || ||| ||| || || | ||| |||||| | ||| Sbjct 1818 AAGAACCACCTTCTCCGCGCGATTGAGACCATCCCTTGCGTGCAGAAGAAGGCCCACTGG 1877 Query 25837 GCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCT 25896 || | |||||| | || | |||| |||||| ||||| | || ||||| || Sbjct 1878 GCTCTCAAGTGGTGCGACTCGCGCCGCGCGGCGTTTGCGGAGCGCATTGTCGCCTTCGCG 1937 Query 25897 GCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAG 25956 || || ||||||||||| ||| ||||| ||| | ||||||||||| ||| || Sbjct 1938 GCCGTCGAGGGCATCTTCTTCTCGGGTTCTTTTTGCTCGATCTTCTGGCTTAAGAAGCGT 1997 Query 25957 GGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCAC 26016 || ||||||||| || ||| || |||||||||||| | || ||||| |||||| Sbjct 1998 GGCCTCATGCCCGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGATGAGGGCCTCCAC 2057 Query 26017 AGAGATTTTGCCTGCCTGCTCTACACG 26043 | || || || |||||||| ||| || Sbjct 2058 TGCGACTTCGCGTGCCTGCTGTACTCG 2084 >seq81 Length=54637 Score = 179 bits (198), Expect = 7e-40 Identities = 730/1132 (64%), Gaps = 44/1132 (4%) Strand=Plus/Minus Query 221508 CGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCG 221567 ||||||| || ||||| || ||||| ||||| || | ||| | | |||| ||| || Sbjct 9464 CGTCGGCGAGACCCTGCACACCGATGCCGATCGGGCGGTGGCGCAGGTTGCT-GCGCTCG 9406 Query 221568 -CTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACT 221626 | || || | ||| || |||||| |||||| | ||||| ||||| | || | ||| Sbjct 9405 GCCTCCGGGATGGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTCACGACC 9346 Query 221627 TTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGT 221686 || | ||| ||||||| | || | ||| ||| || | || Sbjct 9345 TTGGTGATGTCGTAGAGCTTCT------TAAAGTCAAAC--------GTCTTGTCGTCGT 9300 Query 221687 TCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTG 221746 || ||||| | || || | | || ||||| |||||||| ||||||||| Sbjct 9299 TC-ACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACGGCGACCTCGTCCGGCGAC 9241 Query 221747 GTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGA 221806 || |||| | | ||| || |||||||| | ||| || || |||| | || Sbjct 9240 GTGTACTCGAGCACCTCGCAGCAAAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGG 9181 Query 221807 TTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGA 221866 || |||||||| ||| | ||||||||| ||||| | || ||| ||||| | |||| Sbjct 9180 TTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGA 9121 Query 221867 GCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCAC---C 221922 | | | || ||| | |||||| | ||| |||| | |||| ||| || | | Sbjct 9120 GACTCGAGGATCGCGAACCAGAGCTG-CTGCGCGCGGATCGTC---TTGCGCGCGCGGCC 9065 Query 221923 CTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAG 221982 ||| ||| || ||| | || ||| || |||| || || ||| | || || Sbjct 9064 CTC---CTTCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCCCACGTCGTGTAGAG 9008 Query 221983 GCCTGGACACCTGG--CGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGC 222040 || || ||| | |||| || | || ||||| | |||| | | ||| | || | Sbjct 9007 CCCCGGGG-CCTCGTTCGGG-CAGAAGAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTC 8950 Query 222041 ATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACG 222100 |||||||| ||||||||||||| || | || ||||| | | || || ||| Sbjct 8949 ATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCGCGAGCACGATGGAGCTCGTTT 8890 Query 222101 CCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAG 222160 |||| ||| ||| | || || | ||||| || ||||| |||||||||||||| || || Sbjct 8889 CCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAC 8830 Query 222161 ACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTG 222220 | ||| | | ||| |||||| ||| ||||| ||||| | | || ||||| Sbjct 8829 ATGGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTG 8770 Query 222221 AAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGA-CCGTTGGTGCCCTTAATGTACGC 222279 || | ||| || |||| || || ||||| || ||| ||||| ||||| ||||||| Sbjct 8769 AACACGCGGAGCATCGGCACGAGGCCGTTCGA-CGAGCCGTTCGTGCCGCGGATGTACGA 8711 Query 222280 ACCGCCGGCCCTCAGGT--TACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATC 222337 | ||| | | || | | || ||| ||||| || ||||| || ||||| Sbjct 8710 GTTGGTGGCGCGGATGTTGTGCACGCTCACA--CCGATGCCGCCGGCCCACTTGGAGATG 8653 Query 222338 ATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGC 222397 |||||| |||||| ||||| ||||||||| || ||||| ||||| | | |||| Sbjct 8652 CAGGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCCAGC 8593 Query 222398 AGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCG 222457 || || |||||||||| ||| | | | | |||||||||||||| || | ||| Sbjct 8592 AGGAAGCAAGACGACAGCTGCGGGCGCGGCGTGCCAGCGTTAAACAGCGTCGGCGTCGCG 8533 Query 222458 TGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCC 222517 || || ||| ||| ||||| ||||||||||| | | | | |||| || | Sbjct 8532 TGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCAATGTCGTGC 8473 Query 222518 CCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTG 222577 ||| || | ||| | | ||| | ||| || | |||| | || ||||| Sbjct 8472 TTGTGGATGCCGACAGCGACGCGGAGAATCATCTGCTGCGGGCGCTCCGC--GA-CCTTG 8416 Query 222578 GAGCTGGAG---AGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGT 222626 || | | ||||||||||| || || || |||||||| |||||||||| Sbjct 8415 CCGCCGACGCGCAGCAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGT 8364 >seq3296 Length=2747 Score = 161 bits (178), Expect = 2e-34 Identities = 610/945 (65%), Gaps = 23/945 (2%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || ||||| |||||||| |||||||| || |||| | | ||| || ||| Sbjct 999 GCGAGGTTGCACACGGCGACCTCGTCGGGCGACGTGTACTCGAGCACCTCGCAGCAAAGG 1058 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||||| | ||| || || |||| | || || |||||||| ||| | ||||||| Sbjct 1059 TTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTG 1118 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 || ||||| | || ||| ||||| | ||| | | | || ||| | |||||| | Sbjct 1119 TACAGCATGTATGGCGTGCCCGTCTCGATCTGTGACTCGAGGATCGCGAACCAGAGCTG- 1177 Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATACCCGGTATAGAG 221949 ||| |||| | |||| ||| || | |||| ||| || ||| | || || Sbjct 1178 CTGTGCGCGGATCGTC---TTGCGCGCGCGGCCCTC---CTTCTCGTACTGGTGGTACAG 1231 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 | || |||| ||||| ||| | || || || || | | ||| || | || Sbjct 1232 CGCCTCGAACTCGTCACCCCACGTCGTGTAGAGACCCGGTGCCTCGTTGGGGCAGAAGAG 1291 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 ||||| | |||| | | ||| | || ||||||||| ||||||||||||| || | Sbjct 1292 GCTCCACTCGCCGTTGGCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGTA 1351 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 || ||||| | || || || ||| |||| ||| ||| | || || | ||||| Sbjct 1352 GAACAGATCACGGGCGCGATGGAGCTCGTTACCGTGGTTCTTCTTGAGGTCGAGGAACTC 1411 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 || || || ||||||||||| || || || | || | | ||| ||||||| ||| Sbjct 1412 GAAGATATCCGCGTGCCACGGTTCGAGGTACATCGCGAACGAGCCCTTTCGCTTGCCGCC 1471 Query 222190 ACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249 |||||| ||||| | | || |||| || | ||| || |||| || || ||||| Sbjct 1472 ACCCTGGTCCACGTAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGGCACGAGGCCGTT 1531 Query 222250 GGATCGA-CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT--TACTGGCAGA 222306 || ||| ||||| ||||| ||||||| | ||| | | || | | || | Sbjct 1532 TGA-CGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTGGCACGAATGTTGTGCACGCTCA 1590 Query 222307 CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGAT 222366 || ||||| || ||||| |||||||| ||||| ||| || ||||| ||| Sbjct 1591 CA--CCGATGCCGCCGGCCCACTTCGAGATGCAAGCGCACTGCTTCAGCGTGTCGTAGAT 1648 Query 222367 GCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGT 222426 |||||| || ||||| ||||| | | ||||| || |||||||||| ||| | | Sbjct 1649 GCCCTCGATCGAGTCGTCCTTCATGGCAAGCAGGAAGCAAGACGACAGCTGCGGACGCGG 1708 Query 222427 GGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATC 222486 | | |||||||||||||| || | ||||| || ||| ||| ||||| || Sbjct 1709 CGTGCCCGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTC 1768 Query 222487 GTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTA 222546 ||||||||| | | | | |||| || | ||| || | ||| | | Sbjct 1769 GTACGTCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAAT 1828 Query 222547 CATGTACTGGGGCCTCTCCACAGGACCCTTGGAGCTGGAG---AGCAGGTACGATTTTTC 222603 ||| | ||| || | |||| | || ||||| | | | ||||| ||||| || || Sbjct 1829 CATCTGCTGCGGGCGCTCCGC--GA-CCTTGCCACCGACGCGCAGCAGATACGACTTCTC 1885 Query 222604 CAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTG 222648 || |||||||| |||||||||| | |||||| || | | |||| Sbjct 1886 GAGCGTCTTGAAGCCAAAGTAGTCGTAGTCAAAATCGCGGTCGTG 1930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928668760689280