Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3296 223 4e-53 seq81 183 4e-41 seq3341 107 2e-18 >seq3296 Length=2747 Score = 223 bits (246), Expect = 4e-53 Identities = 565/847 (67%), Gaps = 23/847 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205 |||||||| |||| || || |||||| ||||| | || ||| ||||| || | Sbjct 1906 TACTTTGGCTTCAAGACGCTCGAGAAGTCGTATCTGCTGCGCGTCGGTGGCAAGGTCGCG 1847 Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 || ||| ||| | ||| | | || ||||| ||||||||||| | | |||||||| Sbjct 1846 GAGCGCCCGCAGCAGATGATTCTCCGCGTCGCTGTCGGCATCCACAAGCACGACATTGAC 1787 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACC 75325 | | | ||||| ||||| | ||||| ||| | | |||| ||||| || || || Sbjct 1786 GCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGACG 1727 Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385 || || || || || || || | |||||| |||| ||||||||| | |||| ||| Sbjct 1726 CTGTTTAACGCGGGCACGCCGCGTCCGCAGCTGTCGTCTTGCTTCCTGCTTGCCATGAAG 1667 Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445 || ||||| ||| | || ||||| | || || | | |||| || ||||| |||||| Sbjct 1666 GACGACTCGATCGAGGGCATCTACGACACGCTGAAGCAGTGCGCTTGCATCTCGAAGTGG 1607 Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGG 75503 || || || || || || | | || | | | |||| || ||||| || || | Sbjct 1606 GCCGGCGGCATCGGTGTGAGCGTGCACAACATTCGTGCCACCAA--CTCGTACATCCGCG 1549 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || || ||| | || | | || ||||| ||||| ||||||| ||| |||| Sbjct 1548 GCACGAACGGCTCGTCAAACGGCCTCGTGCCGATGCTCCGCGTGTTTAACGACACGGCGC 1489 Query 75564 GCTATGTAAATCAAGCGGGGCG----TCGCAAGGGGTCCATCGCGGTCTACTTGGAACCA 75619 |||| || | | || | |||| || ||||| || ||||| | ||| | ||||| Sbjct 1488 GCTACGTGGA-CCAGGGTGGCGGCAAGCGAAAGGGCTCGTTCGCGATGTACCTCGAACCG 1430 Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGA-GTTACGACTCAACCAAGGTGACGAAGAGGC 75678 ||||| || |||||| | |||||||| || | | || ||||| ||| |||| Sbjct 1429 TGGCACGCGGATATCTTCGAGTTCCTCGACCTCAAGA-AGAACCACGGTAACGAGCTCCA 1371 Query 75679 TCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGA 75738 ||| | ||||| || | || ||||||| || || || ||||||||||| || || Sbjct 1370 TCGCGCCCGTGATCTGTTCTACGCCATGTGGATCCCGGATCTCTTCATGAAGCGAGTCGA 1311 Query 75739 GGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG-CGG 75797 || || | ||| || ||||| || || ||||||| ||||||| | ||| || Sbjct 1310 GGCCAACGGCGAGTGGAGCCTCTTCTGCCCCAACGAGGCACCGGGTCTCTAC-ACGACGT 1252 Query 75798 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATG 75854 |||||| ||||| || || || ||| |||| || ||||||| | || ||| Sbjct 1251 GGGGTGACGAGTTCGAGGCGCTGTACCACCAGTACGAGAAGGAGGGCCGCGCGCGCAAGA 1192 Query 75855 CGA-CTGTAC-CAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912 ||| | | | |||| || | ||| || || ||| | ||||||| ||||| || Sbjct 1191 CGATCCGCGCACAGCAGC-----TCTGGTTCGCGATCCTCGAGTCACAGATCGAGACGGG 1137 Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972 || ||||| ||||| |||||||| | || ||| ||| ||||| |||| | || Sbjct 1136 CACGCCATACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAGCAGAACCTCGG 1077 Query 75973 AACAATC 75979 || ||| Sbjct 1076 CACGATC 1070 >seq81 Length=54637 Score = 183 bits (202), Expect = 4e-41 Identities = 724/1119 (65%), Gaps = 44/1119 (4%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205 |||||||| |||| || || |||||| || || | || ||| |||| || | Sbjct 8366 TACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCTGCTGCGCGTCGGCGGCAAGGTCGCG 8425 Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 || ||| ||| | ||| | | || ||||| ||||||||||| | | |||||||| Sbjct 8426 GAGCGCCCGCAGCAGATGATTCTCCGCGTCGCTGTCGGCATCCACAAGCACGACATTGAC 8485 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACC 75325 | | | ||||| ||||| | ||||| ||| | | |||| ||||| || || || Sbjct 8486 GCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGACG 8545 Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385 || || || ||||| || || | |||||| |||| ||||||||| | |||| ||| Sbjct 8546 CTGTTTAACGCTGGCACGCCGCGCCCGCAGCTGTCGTCTTGCTTCCTGCTGGCCATGAAG 8605 Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445 || ||||| ||| | || ||||| | || || | | |||| || ||||| |||||| Sbjct 8606 GACGACTCGATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGG 8665 Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGG 75503 || || || || || || | | || | | | |||| || ||||| || || | Sbjct 8666 GCCGGCGGCATCGGTGTGAGCGTGCACAACATCCGCGCCACCAA--CTCGTACATCCGCG 8723 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || || || | || | | || ||||| ||||| || |||| ||| |||| Sbjct 8724 GCACGAACGGCTCGTCGAACGGCCTCGTGCCGATGCTCCGCGTGTTCAACGACACGGCGC 8783 Query 75564 GCTATGTAAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 |||| || | || |||| ||| |||||||| || |||| | ||| | || || | Sbjct 8784 GCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCCATGTACCTCGAGCCGT 8843 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGA-GTTACGACTCAACCAAGGTGACGAAGAGGCT 75679 |||| || || ||| | |||||||| || | | || ||||| || |||| ||| Sbjct 8844 GGCACGCGGACATCTTCGAGTTCCTCGACCTCAAGA-AGAACCACGGAAACGA----GCT 8898 Query 75680 C---GGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 | ||| | | ||||| || | || ||||||| || || || ||||||||||| || Sbjct 8899 CCATCGTGCTCGCGATCTGTTCTACGCCATGTGGATCCCGGATCTCTTCATGAAGCGCGT 8958 Query 75736 TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG- 75794 |||| || | ||| || ||||| || || |||| || || |||| | ||| Sbjct 8959 CGAGGCCAACGGCGAGTGGAGCCTCTTCTGCCCGAACGAGGCCCCGGGGCTCTAC-ACGA 9017 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CA 75851 || ||| || ||||| || || || ||| |||| || ||||||| | || || Sbjct 9018 CGTGGGGCGACGAGTTCGAGGCGCTGTACCACCAGTACGAGAAGGAGGGCCGCGCGCGCA 9077 Query 75852 ATGCGA-CTGTAC-CAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGAC 75909 | ||| | | | |||| || | ||| || || ||| | || |||| ||||| Sbjct 9078 AGACGATCCGCGCGCAGCAGC-----TCTGGTTCGCGATCCTCGAGTCTCAGATCGAGAC 9132 Query 75910 TGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTT 75969 || || || || ||||| |||||||| | || ||| ||| ||||| |||| | Sbjct 9133 GGGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAGCAGAACCT 9192 Query 75970 GGGAACAATCAAGAGCTC---AAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGA 76026 || || ||| |||| || |||||| || | | |||||||| ||| Sbjct 9193 CGGCACGATC---CGCTCGAGCAACCTTTGCTGCGAGGTGCTCGAGTACACGTCGCCGGA 9249 Query 76027 TGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGAC 76086 ||| || || ||||| | || || ||||| || | |||| ||| || || || | Sbjct 9250 CGAGGTCGCCGTGTGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTGAACGACGACA- 9308 Query 76087 TCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAA 76146 || ||||| | | | || || | || ||||| ||| | || || || || || Sbjct 9309 --AGACGTTTGACTTTAAGAAGCTCTACGACATCACCAAGGTCGTGACGCGCAACCTGAA 9366 Query 76147 CCGAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCG 76203 | ||||| |||| || | || ||| | ||| | | ||| | || |||| Sbjct 9367 CAAGGTCATCGACATCAACTACTACCCCATCCCGGAGGCCGAGCGCA---GCAACCTGCG 9423 Query 76204 ACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGA 76242 ||| | || || || | ||||| || |||||||| || Sbjct 9424 CCACCGCCCGATCGGCATCGGTGTGCAGGGTCTCGCCGA 9462 >seq3341 Length=2704 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCC-TTCGCCGAG 65079 |||||||||| | ||||| | || |||| ||| | | | ||| | || || ||| Sbjct 1861 AGAAGAAGGCCCACTGGGCTCTCAAGTGGTGCGACTCGC-GCCGCGCGGCGTTTGCGGAG 1919 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 ||| || | || || ||| || ||||| ||||||||||| || || || ||| | || Sbjct 1920 CGCATTGTCGCCTTCGCGGCCGTCGAGGGCATCTTCTTCTCGGGTTCTTTTTGCTCGATC 1979 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| | |||||||| || |||||||| ||||| ||||||| || || || || || Sbjct 1980 TTCTGGCTTAAGAAGCGTGGCCTCATGCCCGGCCTCAGCTTCTCGAACGAGCTCATCTCG 2039 Query 65200 CGAGATGAGGGTCTCCAC 65217 || |||||||| |||||| Sbjct 2040 CGTGATGAGGGCCTCCAC 2057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596456535146560