Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2944 114 3e-20 seq200 109 1e-18 >seq2944 Length=3149 Score = 114 bits (126), Expect = 3e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | |||||| || || || ||||| || || || || || || | | || Sbjct 3056 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCC 2997 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || |||||||| || | || || || || || || || ||||| Sbjct 2996 GTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 2937 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 || |||||||| ||||| || || || |||| || || || || |||| || | Sbjct 2936 GTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGA 2878 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| |||| |||||| || || |||||||| Sbjct 2877 TCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 2841 >seq200 Length=35225 Score = 109 bits (120), Expect = 1e-18 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || || || || | ||| || || || || ||||| || || || || || Sbjct 30878 ACCACCACGCAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 30937 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | ||||| || || || || || || ||||| || | || ||||| ||||| Sbjct 30938 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGG 30997 Query 82703 TATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 || || ||||| || || ||||| ||||| ||||| ||||| |||| ||| || | Sbjct 30998 GATGCCCTCCTTGTCCTGGATCTTCTGCTTG-ACATTGTCAATGCTATCCGAAGGCTCGA 31056 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || ||||||||||| |||| ||||| || || |||||||| Sbjct 31057 CGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 31105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981636467179918