Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3907 125 2e-23 seq436 114 3e-20 >seq3907 Length=2254 Score = 125 bits (138), Expect = 2e-23 Identities = 347/529 (66%), Gaps = 10/529 (2%) Strand=Plus/Minus Query 121129 CTTAATCTCGTCAAAGCGTGTCTGAGACCAATCACATGAATCCATCTTGTTGATTCCAAC 121188 ||| ||||||| | || | || ||||| || || || ||||||||||||| || || Sbjct 1494 CTTGATCTCGTTGTAACGAGCCTCCGACCAGTCGCACGAGTCCATCTTGTTGACACCGAC 1435 Query 121189 AATAACTTTCTCAATACCCAAAAGAGCAAGAATACGTGCGTGAAAACGTGTTTGACCTTG 121248 | | | ||||||||| | ||| || | ||| ||||| ||| || || || | Sbjct 1434 GACGATCTGCTCAATACCGAGAAGGAAGAGGAGACGGGCGTGCTGACGCGTCTGGCCCTC 1375 Query 121249 TGGGATTCCAGCAGAAC----GATCGCCTTTCGCAATAGCAGATTCAAAACCAttttttt 121304 || || || | | || | || ||||| |||| || |||||| || | Sbjct 1374 ATCGACACC----GATCTTGGGGTCAGCCTTGGCAATGGCAGCCTCGAAACCACCCTTCT 1319 Query 121305 CAGCAGGAATAAGAATAAAAGCAGCATCGGCTT-GTCCGACGCCTGAAATCATATTCTTA 121363 |||| || | || || | | | ||||| || | |||| || | ||||| ||||| Sbjct 1318 CAGCCGGGACGAGGATGAGACCGGCATCAGCGCAGCCCGAACCC-GTGATCATGTTCTTG 1260 Query 121364 ATAAAGTCAATATGGCCTGGTGCATCAATAATAGAATAATGATAAGAATCTGTGTAAAAT 121423 || |||| ||||||| || ||||| | || | || || || || ||| | || Sbjct 1259 ATGTAGTCCTTATGGCCAGGGGCATCGACGATCGTGTAGTGGTAGCTGTCCGTGAAGAAC 1200 Query 121424 TCCTTAGTATTACAATTTACTGTAATTCCGCGCTCACGCTCTTCCTTGTTGTTATCCATG 121483 ||||| || ||||| | | || | || ||||||||||| |||||| ||||||| Sbjct 1199 TCCTTCGTGTTACACTGGATCGTCACACCACGCTCACGCTCCTCCTTGCACGTATCCATA 1140 Query 121484 TAATAAGCAAATGCAAAACTAGATTTGCCGTTTGCGTCGGCAAGTTCCTGCAACTTCGCC 121543 || || || || || || || ||||| || || ||||| |||| | ||| ||| Sbjct 1139 TAGTACGCGAAGGCGAACGACGACTTGCCCTTGGCATCGGCCTCGGCCTGGAGCTTGGCC 1080 Query 121544 ATCTCACGAGCATTTATGCCTCCCAATTTAAAGATAAGATGACCGGTTGTTGTTGACTTT 121603 |||||||| | || || || | || ||||| || || || || || || ||||| Sbjct 1079 ATCTCACGCTCGCCGATACCGCCGAGCTTGAAGATGAGGTGGCCCGTCGTCGTCGACTTG 1020 Query 121604 CCCGAGTCAACTTCACCACAGACCACCAAAGATATATGTTGCTTTTCAC 121652 || | || || | || || ||||| | ||| | ||| ||||| |||| Sbjct 1019 CCGGCATCGACGTGGCCGCACACCACAAGAGAAAGATGCTGCTTGTCAC 971 >seq436 Length=19981 Score = 114 bits (126), Expect = 3e-20 Identities = 255/380 (67%), Gaps = 2/380 (1%) Strand=Plus/Minus Query 121274 TTCGCAATAGCAGATTCAAAACCAtttttttCAGCAGGAATAAGAATAAAAGCAGCATCG 121333 || ||||| |||| || |||||| || || || || | ||| || | | | ||||| Sbjct 19797 TTGGCAATGGCAGCCTCGAAACCACCCTTCTCGGCCGGGACAAGGATGAGACCGGCATCA 19738 Query 121334 GCTT-GTCCGACGCCTGAAATCATATTCTTAATAAAGTCAATATGGCCTGGTGCATCAAT 121392 || | |||| || | |||||| ||||| || |||| ||||||| || ||||| | Sbjct 19737 GCGCAGCCCGAACCC-GTAATCATGTTCTTGATGTAGTCCTTATGGCCAGGGGCATCGAC 19679 Query 121393 AATAGAATAATGATAAGAATCTGTGTAAAATTCCTTAGTATTACAATTTACTGTAATTCC 121452 || | || || || || ||| | || ||||| || ||||| | | || | || Sbjct 19678 GATCGTGTAGTGGTAGCTGTCCGTGAAGAACTCCTTCGTGTTACACTGGATCGTCACACC 19619 Query 121453 GCGCTCACGCTCTTCCTTGTTGTTATCCATGTAATAAGCAAATGCAAAACTAGATTTGCC 121512 ||||||||||| |||||| ||||||| || || || || || || || ||||| Sbjct 19618 ACGCTCACGCTCCTCCTTGCACGTATCCATATAGTACGCGAAGGCGAACGACGACTTGCC 19559 Query 121513 GTTTGCGTCGGCAAGTTCCTGCAACTTCGCCATCTCACGAGCATTTATGCCTCCCAATTT 121572 || || ||||| |||| | ||| ||||||||||| | || || || | || Sbjct 19558 CTTGGCATCGGCCTCAGCCTGGAGCTTGGCCATCTCACGCTCGCCGATACCGCCGAGCTT 19499 Query 121573 AAAGATAAGATGACCGGTTGTTGTTGACTTTCCCGAGTCAACTTCACCACAGACCACCAA 121632 ||||| || || || || || || ||||| || | || || | || || ||||| | Sbjct 19498 GAAGATGAGGTGGCCCGTCGTGGTCGACTTGCCGGCATCGACGTGGCCGCACACCACAAG 19439 Query 121633 AGATATATGTTGCTTTTCAC 121652 || | ||| ||||| |||| Sbjct 19438 CGAAAGATGCTGCTTGTCAC 19419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186582246036682