Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3296 253 3e-62 seq81 219 5e-52 seq3341 95.1 2e-14 >seq3296 Length=2747 Score = 253 bits (280), Expect = 3e-62 Identities = 571/845 (68%), Gaps = 21/845 (2%) Strand=Plus/Plus Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 ||||| || | |||| ||||| ||| |||||||| |||||||| |||||||| Sbjct 1071 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTAT 1130 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTG-GTAC 111435 ||||| |||||||| ||||||| | ||| || || ||| | || |||| | | Sbjct 1131 GGCGTGCCCGTCTCGATCTGTGACTCGAGGATCGCGAACCAGA-----GCTGCTGTGCGC 1185 Query 111436 A-ATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 111491 || | ||| || || |||||| |||||||| ||| || || || ||||| | Sbjct 1186 GGATCGTCTTGCGCGCGCGGCCCTCCTTCTCGTACTGGTGGTACAGCGCCTCGAACTCGT 1245 Query 111492 CACCCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 111550 ||||| || ||| | ||||||| ||||||| || || ||||| || ||| | || Sbjct 1246 CACCCCACGTCGT-GTAGAGACCCGGTGCCTCGTTGGGGCAGAAGAGGCTCCACTCGCCG 1304 Query 111551 CCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 111610 |||| || ||||||||||| || || || ||||||| || | || ||||| | Sbjct 1305 TTGGCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCACGG 1364 Query 111611 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGC 111669 ||| |||| ||| ||||| || | | || |||||||| | ||||||||| Sbjct 1365 GCGCGATGGAGCTCGTTACCGTGGTTCT-TCTTGAGGTCGAGGAACTCGAAGATATCCGC 1423 Query 111670 GTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTAC 111726 |||||| || || || || | |||| || |||||||| ||| || | || | || Sbjct 1424 GTGCCACGGTTCGAGGTACATCGCGAACGAGCCCTTTCGCTTGCCGCCACCCTGGTCCAC 1483 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 |||||||| ||| ||||||| ||||| ||||| || | | || | ||| || || Sbjct 1484 GTAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGGCACGAGGCCGTTTGACGAGCCGTT 1543 Query 111787 TGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 111844 || || || || ||||| || |||| | | | || | | || || || || Sbjct 1544 CGTGCCGCGGATGTACGAG--TTGGTGGCACGAATGTTGTGCACGCTCACACCGATGCCG 1601 Query 111845 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 || |||||||| ||||| || |||| | | || || | ||||| || | ||| ||| Sbjct 1602 CCGGCCCACTTCGAGATGCAAGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCGATCGAG 1661 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 111964 || ||||| |||| | ||||||||| |||| |||||| | || || || || || Sbjct 1662 TCGTCCTTCATGGCAAGCAGGAAGCAAGACGACAGCTGCGGACGCGGCGTGCCCGCGTTA 1721 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAG 112024 || || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | Sbjct 1722 AACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGC 1781 Query 112025 ACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 | | |||||||| | | ||||||||||| ||||| || | | ||| | ||| ||| Sbjct 1782 GCGGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATCATCTGCTGCGGG 1841 Query 112085 GTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCA 112144 ||| || ||||| ||| || | ||||| |||||| || || |||| ||| Sbjct 1842 CGCTCCGCGACCTTGCCACCGACGCGCAGCAGATACGACTTCTCGAGCGTCTTGAAGCCA 1901 Query 112145 AAGTA 112149 ||||| Sbjct 1902 AAGTA 1906 >seq81 Length=54637 Score = 219 bits (242), Expect = 5e-52 Identities = 1174/1846 (64%), Gaps = 51/1846 (3%) Strand=Plus/Minus Query 110331 TGAACTGAATTG-GTCGGGCTTTCGCCTT-TGATCGGAGATAGTACATCCCGGTCTTGAG 110388 ||||||| || | ||||| ||| ||| || ||||| |||||||| ||||||||||| Sbjct 10187 TGAACTGGATCGCGTCGGCCTTCGGCCGGCTG--CGGAGGTAGTACATGCCGGTCTTGAG 10130 Query 110389 TCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCAT 110448 || | ||||| ||||| | ||||| || | ||||||| ||||| || | || Sbjct 10129 GCCCTTCTTCCACGCGTAGAAGTGCATCGACGTGAGCTTGCTGATCGTCGGCTCGGCGAT 10070 Query 110449 GAAGAGGTTCATACTTTGACTTTGGTCAATGAAG-CGCCCCCGTTGTGCCGCCATATCAA 110507 | | ||||| || || ||| ||| || |||| | || | |||||||| || | Sbjct 10069 GTGCACGTTCAGCGACTGGCTCTGGCAGATGTAGGCGCCGCGGTCG-GCCGCCATGTCCA 10011 Query 110508 TGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGA 110567 || ||||| ||| || ||||| || || || | ||||| | || |||| Sbjct 10010 GCACGGCCTTCTGCTTGATCTCCCACACGGTCTTGTACTTCTCCTTGACCGCGTCGGGGA 9951 Query 110568 TATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGG 110627 | | | ||||| | || || | | || || | | || || | Sbjct 9950 TCGCGCGCACGTTCTGCACCGAGCCGTGGTCATGCAGAATCTGGTTGCGCACCTCGGGCG 9891 Query 110628 ACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCAC 110687 ||||| || | || |||| || || | ||||| |||||| || || |||||| | Sbjct 9890 TCCAGATGCCGAGCTCGATGAGCTCCTTCATGAGGTACTTGTTCACGATCGTAAACTCGC 9831 Query 110688 CTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTAC 110747 | ||||| | | ||| ||||| || ||| | || || | | || || || | Sbjct 9830 CGGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGC 9771 Query 110748 CCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGAC 110807 | | || || ||||| || || |||||||| || || | || || ||| || | | Sbjct 9770 CGAGAATCTGCGCGGTCGACGCCGTTGGCATGGGCGCGAGCAGCAGCGAGTTGCGCACGC 9711 Query 110808 CCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGC----TTGGTTTCA 110863 | | || ||||| || ||||||| | ||||||| || | | | ||| | | Sbjct 9710 CGTACTGCTTGACGCTGGCCTTGAGCGCCGCCCAGTCCCAGAGGCCCGACGTCGGTGTGA 9651 Query 110864 CCTTCCCACATGTCAAACTG-AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTC 110922 | |||||||||| |||| ||| |||||| |||| || |||||| || | | Sbjct 9650 CGC-CCCACATGTCGTACTGGAAGATGCCCTTGCTCACCGGG-GAGCCCTCATAGCTGGC 9593 Query 110923 ATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGT 110982 ||| | || || | | || | || | |||||||| | || |||| || Sbjct 9592 ATACGGGCCGTGCTCCTTGGCGAGCTCCATGGACGCCTCCATCGCACCGAAGTACAGAGT 9533 Query 110983 TTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA 111042 || ||||| || | ||| ||| || || || || |||| || | Sbjct 9532 CTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTCTCGAACGCGTGGCCCATGAG 9473 Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102 ||| || | || |||||||| || ||||| | || || || | ||| |||| || Sbjct 9472 AATGAACGCGTCGGCGAGACCCTGCACACCGATGCCGATCGGGCGGTGGCGCAGGTTGC- 9414 Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 | ||| | | ||| | ||| || | || |||| ||||| ||| || || Sbjct 9413 --TGCGCTCGGCCTCCGGGATGGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCG 9356 Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219 || || | ||| ||||| || | || || | | | ||||| || | || || || Sbjct 9355 CGTCACGACCTTGGTGATGTCGTAGAGCTTCTTAAAGTCAAACGTCT---TGTCGTCGTT 9299 Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 ||| |||| | || ||||| || || | ||||| || || ||| ||| || Sbjct 9298 CACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACGGCGACCTCGTCCGGCGACGT 9239 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTA---ATCGTCCCCAAATTCTTTTG 111336 |||||| | | || || | |||| ||| ||||| || | |||| || Sbjct 9238 GTACTCGAGCACCTCGCAGCAAAGGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTG 9182 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| ||| |||||||| |||||||| |||||||| ||||| |||||||| |||| Sbjct 9181 GTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTG 9122 Query 111397 TGATTTGAGAATAGCCTTCCAAACAT-CGGCG-GCTGGTACAATGGCGTTGGCCCGTCCC 111454 || | ||| || || ||| | | | ||| || | | | ||| || || ||| Sbjct 9121 AGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGC--GCGCGGCCC 9064 Query 111455 TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG-CGTCGGAGAGACC 111513 ||| |||||||| ||| || || || ||||| || ||| || ||| | |||| || Sbjct 9063 TCCTTCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCCCACGTCGT-GTAGAGCCC 9005 Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573 || |||| || || ||||| || ||| | || |||| || ||||||||||| Sbjct 9004 CGGGGCCTCGTTCGGGCAGAAGAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAA 8945 Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACC---GAGCCTCTTCGTCAC 111629 || || || ||||||| || | || ||||| | | ||| |||| |||| | Sbjct 8944 GAGATCCGGGATCCACATGGCGTAGAACAGATCGCGAGCACGATGGAGC----TCGTTTC 8889 Query 111630 CTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAG 111688 | ||||| || | | || |||||||| | ||| ||||||||||| ||||| || || Sbjct 8888 CGTGGTTCT-TCTTGAGGTCGAGGAACTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAC 8830 Query 111689 ACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTA 111745 | |||| || ||||| || ||| | | || | || |||||||| ||| |||| Sbjct 8829 ATGGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTG 8770 Query 111746 AATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAG 111803 || ||||| ||||| || | | || | || || || || || || || ||||| Sbjct 8769 AACACGCGGAGCATCGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAG 8710 Query 111804 ATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTT 111863 || |||| | | | || | | || || || || || |||||||| ||||| Sbjct 8709 --TTGGTGGCGCGGATGTTGTGCACGCTCACACCGATGCCGCCGGCCCACTTGGAGATGC 8652 Query 111864 GCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAA 111923 || |||| | | || || | ||||| || | ||| ||||| ||||| |||| | | Sbjct 8651 AGGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCCAGCA 8592 Query 111924 GGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGT 111983 |||||||| |||| |||||| | || || ||||| || || || || || || |||| Sbjct 8591 GGAAGCAAGACGACAGCTGCGGGCGCGGCGTGCCAGCGTTAAACAGCGTCGGCGTCGCGT 8532 Query 111984 GAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCC 112043 | |||| | | ||| ||||| | ||||| ||||| | | | |||||||| | | Sbjct 8531 GCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCAATGTCGTGCT 8472 Query 112044 CGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCAT 112103 ||||||||||| ||||| || | | ||| | ||| ||| ||| || |||| Sbjct 8471 TGTGGATGCCGACAGCGACGCGGAGAATCATCTGCTGCGGGCGCTCCGCGACCTTGCCGC 8412 Query 112104 CGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||| || | || || |||||| || || |||| |||||||| Sbjct 8411 CGACGCGCAGCAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTA 8366 >seq3341 Length=2704 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| |||||||| || || || || || || ||||||| || || |||||||| || Sbjct 2057 GTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCGGGCATGAGGCC 1998 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | ||| || || || ||||||||||| ||||| || Sbjct 1997 ACGCTTCTTAAGCCAGAAGATCGAGCAAAAAGAACCCGAGAAGAAGATGCCCTCGACGGC 1938 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAA 122816 ||| || || | || ||| || || || Sbjct 1937 CGCGAAGGCGACAATGCGCTCCGCAAA 1911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627912972235200