Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3296 239 5e-58 seq81 228 9e-55 seq3341 127 2e-24 >seq3296 Length=2747 Score = 239 bits (264), Expect = 5e-58 Identities = 1158/1824 (63%), Gaps = 47/1824 (3%) Strand=Plus/Minus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTC 104200 |||||||||| | ||||| |||| || || |||||| ||||| | || || Sbjct 1915 GACTACGACT------ACTTTGGCTTCAAGACGCTCGAGAAGTCGTATCTGCTGCGCGTC 1862 Query 104201 GATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCAT 104260 | ||| | ||| ||| ||| | ||| | | ||||| || |||| || || Sbjct 1861 GGTGGCAAGGTCGCGGAGCGCCCGCAGCAGATGATTCTCCGCGTCGCTGTCGGCATCCAC 1802 Query 104261 GGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT 104320 | | |||||||| | | | ||||| ||||| | ||||| ||| | | |||| Sbjct 1801 AAGCACGACATTGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACG 1742 Query 104321 CACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTC 104380 ||||| || || || || || || || || || || | || || |||| ||||||| Sbjct 1741 CACGCGACGCCGACGCTGTTTAACGCGGGCACGCCGCGTCCGCAGCTGTCGTCTTGCTTC 1682 Query 104381 CTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCG 104440 || | |||| ||||| ||||| ||| | || ||||| | || || | | |||| || Sbjct 1681 CTGCTTGCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTGAAGCAGTGCGCT 1622 Query 104441 CAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAA 104500 ||||| |||||||| || || || || || | | || | | | |||| || Sbjct 1621 TGCATCTCGAAGTGGGCCGGCGGCATCGGTGTGAGCGTGCACAACATTCGTGCCACCAA- 1563 Query 104501 TCTCGTA--TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTAT 104558 |||||| | || || || || || ||| | || | | || ||||| ||||| | Sbjct 1562 -CTCGTACATCCGCGGCACGAACGGCTCGTCAAACGGCCTCGTGCCGATGCTCCGCGTGT 1504 Query 104559 TTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAG 104615 |||||| ||| |||||||| || | || | ||| | |||||||| || |||| Sbjct 1503 TTAACGACACGGCGCGCTACGTGGACCAGGGTGGCGGCAAGCGAAAGGGCTCGTTCGCGA 1444 Query 104616 TCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAG 104675 | || || || || ||||||||||||||| | |||||||| || | ||||| | Sbjct 1443 TGTACCTCGAACCGTGGCACGCGGATATCTTCGAGTTCCTCGACCTCAAGAAGAACCACG 1384 Query 104676 GTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCA 104735 || ||||| || ||| ||||| |||| ||| | ||||| || |||||||||| Sbjct 1383 GTAACGAGCTCCATCGCGCCCGTGATCTGTTCTACGCCATGTGGATCCCGGATCTCTTCA 1324 Query 104736 TGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTC 104795 ||||| |||| |||| | ||| | ||| ||||| || || || ||||||| |||| Sbjct 1323 TGAAGCGAGTCGAGGCCAACGGCGAGTGGAGCCTCTTCTGCCCCAACGAGGCACCGGGTC 1264 Query 104796 TCTCCGATGCCGT-GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGT 104854 ||| | | | ||| |||||| ||||| || || || ||| |||||||| | || || Sbjct 1263 TCTAC-ACGACGTGGGGTGACGAGTTCGAGGCGCTGTACCACCAGTACGAGAAGGAGGGC 1205 Query 104855 CGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACC 104914 || ||| |||| | | || | | ||| || || ||| |||| || | | Sbjct 1204 CGCGCGCGCAAGACGATCCGCGCACAGCAGCTCTGGTTCGCGATCCTCGAGTCACAGATC 1145 Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974 ||||| || || ||||||||||| ||||| ||| | || |||| ||| || || || Sbjct 1144 GAGACGGGCACGCCATACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAGCAG 1085 Query 104975 AATTTGGGTGTGAT---CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGAC 105031 || | || ||| | ||| ||| || || || | | || | || Sbjct 1084 AACCTCGGCACGATCCGCTCGAG---CAACCTTTGCTGCGAGGTGCTCGAGTACACGTCG 1028 Query 105032 AAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCA 105091 || ||| || ||||| |||||||| || ||||| || |||||| |||| | | Sbjct 1027 CCCGACGAGGTCGCCGTGTGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTGAA--CG 970 Query 105092 GAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAAC 105151 |||||| || ||||| | | || ||| |||| | || || || || ||| Sbjct 969 ACGACAAA-ACGTTTGACTTCAAGAAGCTCTACGACATCACCAAGGTCGTGACGCGCAAC 911 Query 105152 CTAAACAGAGTTATTGATAGAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAAT 105208 | |||| || || || | || | ||||| | ||| | | || | || Sbjct 910 TTGAACAAGGTCATCGACATCAACTACTACCCAATCCCAGAGGCCGAGCGCA---GCAAC 854 Query 105209 ATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGT 105268 ||| | ||||| || || || | ||||| ||||||||||| || | || ||||| Sbjct 853 ATGCGCCACCGCCCGATCGGCATTGGTGTGCAGGGTCTCGCCGACGCGTTTATTCTCATG 794 Query 105269 CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATG 105328 |||| | || || |||| || ||| |||| | ||| || ||||| || Sbjct 793 GGCCATCCGTTCGAGAGTAACGAGGCACGCGAACTCAACAAGAACATCTTCGAGACGCTG 734 Query 105329 TATCACGCCGCTCTTGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAA 105386 || || || | ||||| || || || | || ||| | || || |||| | Sbjct 733 TACTTCGGTGCGATGGAGGC--GTCCATGGAACTCGCCAAGGAGCACGGCCCGTATGCCA 676 Query 105387 CCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGA- 105444 || |||||| || || | | ||| || ||| |||| || ||||||| || | Sbjct 675 GCTATGAGGGCTC-CCCGGTGAGCAAAGGCATCTTCCAATACGACATGTGGG-GCGTCAC 618 Query 105445 ---GACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCT 105501 ||| | | || ||||||| || ||||||| || ||||| || | ||| | Sbjct 617 GCCGACGTCGGGCCTCTGGGACTGGGCGGCGCTCAAGGCCAGCGTCAAGCAGTATGGTGT 558 Query 105502 TCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAA 105561 || ||| || || | || || |||||||| || || || || || || | || || Sbjct 557 GCGCAACTCGCTGCTGCTCGCGCCTATGCCAACGGCATCGACTGCGCAGATTCTTGGCAA 498 Query 105562 TAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGA 105621 || || | |||| || | |||||| ||||| || | | ||||| || || Sbjct 497 CAACGAGTCGATTGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTCGCCGGCGA 438 Query 105622 GTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAA 105681 |||| ||| || |||||| | ||| || | || |||| || | || ||||| | Sbjct 437 GTTTACGATCGTGAACAAGTACCTCATGAAGGAGCTCATCGATCTGGGAATCTGGACGCC 378 Query 105682 GGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATAT---TGTGGATAT 105738 || || | | || || | | || || |||| || | |||| || Sbjct 377 CGAGGTGCGCAACCAGATCCTGCATGACCACGGCTCGGTTCAGAACGTGCGTGTG---AT 321 Query 105739 TCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCAT 105798 || | | | ||| || |||| || || ||||| |||||| ||||| || | Sbjct 320 CCCCGACGCGGTCAAGGAGAAGTACAAGACCGTGTGGGAGATCAAGCAGAAGGCCGTGCT 261 Query 105799 TGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCAT 105858 ||||||||||| || || ||| || ||| || || || |||| | ||| Sbjct 260 GGACATGGCCGCCGACCGCGGTGCCTACATCTGCCAGAGCCAGTCGCTGAACGTGCACAT 201 Query 105859 GGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCT 105918 | ||||||||| ||||||| | || |||||| | ||| ||||||||||| || Sbjct 200 CGCCGATCCAACGATCAGCAAGCTCACGTCGATGCACTTCTACGCATGGAAGAAGGGCCT 141 Query 105919 CAAAACGGGGATGTATTACCTCCG 105942 ||| || || ||||| |||||||| Sbjct 140 CAAGACCGGCATGTACTACCTCCG 117 >seq81 Length=54637 Score = 228 bits (252), Expect = 9e-55 Identities = 950/1477 (64%), Gaps = 39/1477 (3%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| | | ||||| || |||| || || | | |||||||| | | Sbjct 8431 CCCGCAGCAGATGATTCTCCGCGTCGCTGTCGGCATCCACAAGCACGACATTGACGCCGC 8490 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||||| | ||||| ||| | | |||| ||||| || || || || || Sbjct 8491 GCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGACGCTGTT 8550 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 || ||||| || || | || || |||| ||||||||| | |||| ||||| || Sbjct 8551 TAACGCTGGCACGCCGCGCCCGCAGCTGTCGTCTTGCTTCCTGCTGGCCATGAAGGACGA 8610 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | || ||||| | || || | | |||| || ||||| |||||||| || Sbjct 8611 CTCGATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCCGG 8670 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACA 104518 || || || || | | || | | | |||| || |||||| | || || || Sbjct 8671 CGGCATCGGTGTGAGCGTGCACAACATCCGCGCCACCAA--CTCGTACATCCGCGGCACG 8728 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || || | || | | || ||||| ||||| || |||| ||| |||||||| Sbjct 8729 AACGGCTCGTCGAACGGCCTCGTGCCGATGCTCCGCGTGTTCAACGACACGGCGCGCTAC 8788 Query 104579 GTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 || | || | || | || ||||| || |||| | || || ||||| |||||| Sbjct 8789 GTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCCATGTACCTCGAGCCGTGGCAC 8848 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 ||||| ||| | |||||||| || | ||||| || ||||| || ||| Sbjct 8849 GCGGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGAAACGAGCTCCATCG-TGC 8907 Query 104696 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 |||||||| |||| ||| | ||||| || ||||||||||||||| | || |||| | Sbjct 8908 TCGCGATCTGTTCTACGCCATGTGGATCCCGGATCTCTTCATGAAGCGCGTCGAGGCCAA 8967 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT-GGGTG 104813 ||| | ||| ||||| || || || |||| || || |||| | | | ||| ||| | Sbjct 8968 CGGCGAGTGGAGCCTCTTCTGCCCGAACGAGGCCCCGGGGCTCTAC-ACGACGTGGGGCG 9026 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGC 104873 | ||||| || || || ||| |||||||| | || || || ||| |||| | | Sbjct 9027 ACGAGTTCGAGGCGCTGTACCACCAGTACGAGAAGGAGGGCCGCGCGCGCAAGACGATCC 9086 Query 104874 CAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932 || || | | | ||| || || ||| ||||||| | |||||| || || || ||| Sbjct 9087 GCGC-GCAGCAGCTCTGGTTCGCGATCCTCGAGTCTCAGATCGAGACGGGCACGCCGTAC 9145 Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT---C 104989 ||||| ||||| ||| | || |||| ||| || || |||| | || ||| | Sbjct 9146 ATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATCCGC 9205 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 ||| ||| || || || | | || | || || ||| || ||| Sbjct 9206 TCGAG---CAACCTTTGCTGCGAGGTGCTCGAGTACACGTCGCCGGACGAGGTCGCCGTG 9262 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGAT 105109 || |||||||| || ||||| || |||||| |||| | | ||| ||||| ||||| Sbjct 9263 TGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTGAA--CGACGAC-AAGACGTTTGAC 9319 Query 105110 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGAT 105169 | | | || ||| |||| | || || || || ||||| |||| || || || Sbjct 9320 TTTAAGAAGCTCTACGACATCACCAAGGTCGTGACGCGCAACCTGAACAAGGTCATCGAC 9379 Query 105170 AGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 | || | |||||| | ||| | | || | || || | ||||| || || Sbjct 9380 ATCAACTACTACCCCATCCCGGAGGCCGAGCGCA---GCAACCTGCGCCACCGCCCGATC 9436 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 105286 || ||||||| ||||||||||| || | |||||||| ||||||| || || | Sbjct 9437 GGCATCGGTGTGCAGGGTCTCGCCGACGCGTTCATTCTCATGGGCCACGCGTTCGAGAGC 9496 Query 105287 GACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAG 105346 ||||| || || |||| | ||| || ||||| |||| || || | ||| Sbjct 9497 GACGAGGCCCGCGAGCTCAACAAGAACATCTTCGAGACTCTGTACTTCGGTGCGATGGAG 9556 Query 105347 GCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404 || || || ||| | || ||| | || || |||| | || |||||| || || | Sbjct 9557 GC--GTCCATGGAGCTCGCCAAGGAGCACGGCCCGTATGCCAGCTATGAGGGCTC-CCCG 9613 Query 105405 CTTCACAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACCAA----GCTTCACTA 105459 | |||||| ||| || | || ||||||| || | ||| | | | || Sbjct 9614 GTGAGCAAGGGCATCTTCCAGTACGACATGTGGG-GCGTCACACCGACGTCGGGCCTCTG 9672 Query 105460 CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCAT 105519 ||||||| || ||||||| || ||||| || | || | || ||| || || | Sbjct 9673 GGACTGGGCGGCGCTCAAGGCCAGCGTCAAGCAGTACGGCGTGCGCAACTCGCTGCTGCT 9732 Query 105520 GGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 105579 || || |||||||| || || ||||| || || | || || || || | | || || Sbjct 9733 CGCGCCCATGCCAACGGCGTCGACCGCGCAGATTCTCGGCAACAACGAGTCGATCGAGCC 9792 Query 105580 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAA 105639 | |||||| ||||| || | | ||||| || |||||| ||| || ||||| Sbjct 9793 GTTCACGACCAACATGTACAACCGCCGCGTGCTCGCCGGCGAGTTTACGATCGTGAACAA 9852 Query 105640 GCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGG 105676 | | ||| || | || |||| ||| | || ||||| Sbjct 9853 GTACCTCATGAAGGAGCTCATCGAGCTCGGCATCTGG 9889 >seq3341 Length=2704 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 94747 CAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC-TTTGCTGA 94805 || ||||| || | |||||| | ||||||| || | | |||| | ||||| || Sbjct 1860 CAGAAGAAGGCCCACTGGGCTCTCAAGTGGTGCGACTCGC-GCCGCGCGGCGTTTGCGGA 1918 Query 94806 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTAT 94865 ||| | |||| || ||| || ||||| ||||||||||| ||||| || ||| | || Sbjct 1919 GCGCATTGTCGCCTTCGCGGCCGTCGAGGGCATCTTCTTCTCGGGTTCTTTTTGCTCGAT 1978 Query 94866 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 94925 | ||||| |||||||| || |||||||| || ||| ||||||| |||||||| ||||| Sbjct 1979 CTTCTGGCTTAAGAAGCGTGGCCTCATGCCCGGCCTCAGCTTCTCGAACGAGCTCATCTC 2038 Query 94926 TCGTGACGAGGGACTCCAC 94944 ||||| ||||| |||||| Sbjct 2039 GCGTGATGAGGGCCTCCAC 2057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583150257496880