Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950955.1_202016-12-27] 15,162 sequences; 47,141,692 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5117 190 5e-43 seq2944 140 8e-28 seq1461 134 3e-26 seq200 127 5e-24 seq3634 113 1e-19 >seq5117 Length=1594 Score = 190 bits (210), Expect = 5e-43 Identities = 212/283 (75%), Gaps = 0/283 (0%) Strand=Plus/Plus Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504 |||||||||| ||||||| ||||||||| | ||||||| | ||| ||| | | |||| Sbjct 923 TATATTTAATTTTTGGTGCTTTTTCTGGTGTAGTAGGTACAACATTATCTCTTTTAATAA 982 Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACG 7564 | | |||||||| || ||| |||||| || | || ||| || | || || | Sbjct 983 GAATGGAATTAGCACAACCTGGTAATCAAATTTTTATGGGAAATCATCATTTATATAATG 1042 Query 7565 TTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAG 7624 || || |||| || || || ||| | ||||||||||| | || ||||| || | || | Sbjct 1043 TTGTTGTTACCGCACACGCTTTTTTAATGATTTTCTTCATGGTAATGCCTATTTTAATTG 1102 Query 7625 GCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAA 7684 | ||||| || ||||| || || ||||||||||| ||||||||||||||||||||||| | Sbjct 1103 GTGGTTTTGGTAATTGGTTTGTACCTTTAATGATAGGTGCTCCTGATATGGCTTTTCCTA 1162 Query 7685 GGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | | || ||||| ||||| || ||| |||| ||||| ||||| Sbjct 1163 GAATGAATAATATTAGTTTCTGGTTATTACCACCTTCTTTATT 1205 Score = 91.5 bits (100), Expect = 4e-13 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||||||||| ||||||||||| | || || | || ||| Sbjct 1424 AAAGGTAATCTATGGAAACTTAAACCAGGAGCTCTCATATTATAAATAGTTGAAAGAAAA 1365 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | || || ||||| | | ||||||||||| || |||||||| Sbjct 1364 TTAATAGCACCTAATAATGATGAAATACCAGATAAGTGTAAACTAAAAATAGCTAAATCT 1305 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || ||||| || |||| | || ||| || || || ||||| || || Sbjct 1304 ACTGAAGGACCAGAGTGTGCTTGTACACTTGA---TAATGGTGGATATACTGTCCAACCT 1248 Query 371542 GT 371543 || Sbjct 1247 GT 1246 >seq2944 Length=3149 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| || | || || Sbjct 3062 ACGGAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGT 3003 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || || ||||| || || || ||||| ||||| || || Sbjct 3002 GCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCC 2943 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| |||||||| ||||| | ||| || | |||||||| | Sbjct 2942 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 2883 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||||||||| || || | ||| | ||||| Sbjct 2882 CGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 2841 >seq1461 Length=6829 Score = 134 bits (148), Expect = 3e-26 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || || || |||||||| |||||||||||||| ||||| Sbjct 581 GAAAATTTGACCATCAGTAATTGAAATTACGTTTGTAGGAATATAAGCAGAAACGTCACC 640 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | ||||||||| ||||||| ||| |||||||| | |||||||| Sbjct 641 AGCTTGAGTTTCAATAACAGGTAAAGCTGTTAATGAACCACCACCTATTTTTTTATT 697 Score = 98.7 bits (108), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || ||||| |||||||||| | |||| |||||||||||||||||||||||||||||| || Sbjct 898 GCTCCATATACAGGTTGTGCTTTAGGTGAATATTTTAGAGATAATGGTAAACATGCTGTA 839 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 || | || ||||||||| |||||| Sbjct 838 ATTTTTTATGATGATTTATCAAAACAA 812 >seq200 Length=35225 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || || || || |||| ||||| || | | || | || || Sbjct 30894 AGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 30953 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || || || || |||||||| Sbjct 30954 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCC 31013 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||| ||| || ||| | || || | || ||||| | |||||||||| Sbjct 31014 TGGATCTTCTGCTTGACATTGTCAATGCTATCCGAAGGCTCGACGTCGAGCGTGATCGTC 31073 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| ||| || | ||| | ||||| || Sbjct 31074 TTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTT 31108 >seq3634 Length=2448 Score = 113 bits (124), Expect = 1e-19 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | ||||||||| || | ||||| ||| Sbjct 1422 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAAAGG-CAG 1364 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 1363 CAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 1320 Score = 102 bits (112), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 756 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 815 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| | |||||| | || | ||||| ||| | || Sbjct 816 GGCTCCCGTCAATTCCTTTGAATTTCGATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 875 Query 7850 TACGCGTTAGCTTAATTAATATAAAAA 7876 |||||||||||| || || |||||| Sbjct 876 AACGCGTTAGCTTGAT--ATCTAAAAA 900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192299535162428