Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq715 114 3e-20 seq265 111 3e-19 seq4 104 5e-17 seq671 95.1 3e-14 >seq715 Length=275277 Score = 114 bits (126), Expect = 3e-20 Identities = 301/452 (67%), Gaps = 8/452 (2%) Strand=Plus/Plus Query 230171 CGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTT 230230 ||||||| |||||| ||||||||| | |||| ||||| | || || || | Sbjct 111093 CGTTTGCTGAGCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTCGT 111152 Query 230231 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 230290 ||||| | |||| ||||| ||| ||| | |||||||||||| | | || |||| Sbjct 111153 TCTGCTCGGTCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACG 111212 Query 230291 AGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAG 230349 || | |||||||| ||||| |||||||| | |||| | |||| | || ||| Sbjct 111213 AGCTTATCAGTCGTGACGAAGGTCTCCACTGTGACTTCGCCT-GCTTGCTCTACAACAAG 111271 Query 230350 CTCCAGAACAAGCTACCAT--TCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAA 230407 || ||| || ||| ||| || || | | || | | || || || | Sbjct 111272 CTTGTCAACCGTCTCCCAGAGTCGCGAA--TCCACGAGATTGTCAGTGATGCCGTCACGA 111329 Query 230408 ACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAA 230466 ||| ||||||||| | ||| | | ||| |||| ||||| || |||||| | | Sbjct 111330 TCGAGAAGGAGTTCGTCAAGGACTCGCTCCCA-GTCGAGCTTATCGGTATGAACTCGGCG 111388 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 || ||| | ||||||||||| ||||| || || || || | || |||||| | | Sbjct 111389 CTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTCCACGCTCTTGGTGTCTCG 111448 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586 || | |||||| | ||||| |||| | ||||| | || ||||| || || ||| Sbjct 111449 AAGATCTACAACGCGTCTAACCCATTTGACTGGATGGATATGATCTCGCTCCAGGGCAAG 111508 Query 230587 ACCAACTTCTTCGAAAAGCGTGTCAGTGACTA 230618 |||||||||||||| |||||||| |||| || Sbjct 111509 ACCAACTTCTTCGAGAAGCGTGTTGGTGAATA 111540 >seq265 Length=38059 Score = 111 bits (122), Expect = 3e-19 Identities = 67/71 (94%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 37000 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 37059 Query 165770 CCCACGATGGG 165780 |||||| |||| Sbjct 37060 CCCACGGTGGG 37070 >seq4 Length=313877 Score = 104 bits (114), Expect = 5e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 318991 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 319050 || ||||| |||||||| ||||||| ||||| |||||||||| | ||||| | Sbjct 172348 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGAGATGTCCAAG 172289 Query 319051 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 319110 || || || |||||||||||||| ||||| || |||||||| | ||| | || ||| Sbjct 172288 TGCTCTTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAAGCGAAACGAAGGGCAGGGTGC 172229 Query 319111 TTCCAAACACTA-CCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 ||||| ||| || |||| | |||| || | || || || | || ||| || | ||| Sbjct 172228 TTCCACACAGTACCCGACGTTGGC-TCGACTTCACCAGTCAACATCTTGATCATGGTCGA 172170 Query 319170 TTTCCCCGCACCGTTT 319185 || || ||||||||| Sbjct 172169 CTTACCAGCACCGTTT 172154 >seq671 Length=2351 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| | ||||||| | |||||||||||||||||| Sbjct 881 GCCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGC 822 Query 165770 CCCACGATGGGC 165781 |||||| |||| Sbjct 821 CCCACGGGGGGC 810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057814187360120