Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq715 131 2e-25 seq598 89.7 6e-13 >seq715 Length=275277 Score = 131 bits (144), Expect = 2e-25 Identities = 305/454 (67%), Gaps = 11/454 (2%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || ||||| || ||||| ||||| ||||| | ||| || | ||||| || || | Sbjct 111259 CAAGCAGGCGAAGTCACAGTGGAGACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCT 111200 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 24249 ||| || ||||| || |||||||| || ||||| || | || ||| || || || || | Sbjct 111199 GAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCGA-GCAGAACGAACCCGAGA 111141 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT 24309 |||| || || || | || || ||||| | | | || || | ||||| | || | Sbjct 111140 AGAAGATACCCTCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTC-T 111082 Query 24310 GTATC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365 | || || | ||||| | ||||||||| | || || || |||||||| || Sbjct 111081 GAGTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATG 111022 Query 24366 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425 || || | | ||| || || ||| || | || || |||||||| || Sbjct 111021 GCGCGGAACAAGTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAG 110962 Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 ||||||||||| || ||||| |||||||| || || || |||||||| || | || || Sbjct 110961 TACATTTCCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCA 110902 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCGTCAC 24543 | | ||| ||||| | | || |||| || | || || ||||| || || |||| Sbjct 110901 GGCACCTGGACTTCGTTGCTGAA--GTTCATGGCAAGGTTCTCGTTCACAATACCATCAC 110844 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAA 24577 |||| || || ||||| | || || || || || Sbjct 110843 TGGCAGCGAAGAACGCGAGCACGTGCTTGATGAA 110810 >seq598 Length=3624 Score = 89.7 bits (98), Expect = 6e-13 Identities = 370/574 (64%), Gaps = 10/574 (2%) Strand=Plus/Minus Query 54104 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTC 54163 ||||| || | || | |||| | | || || | ||||| || |||||||| |||| Sbjct 3059 TTCTTCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCG 3000 Query 54164 AT--AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 54221 | ||| | | || ||| ||| ||||| || | ||| | ||| |||| || | | Sbjct 2999 AACGAACCCTTG--CGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACA 2942 Query 54222 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 54281 | | ||||||||||| | |||||| || | || || || ||| || || || | Sbjct 2941 CACGCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAG 2882 Query 54282 TGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGC 54341 ||||||| || || || | ||| || || || ||| || ||||| | |||| Sbjct 2881 TGGCACGGATGTTGTGCATGCTGACACCGATACCACCGGCCCACTTGGAGATGCAAGCGC 2822 Query 54342 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 54401 | || | ||| |||||||| ||||| || |||||| |||| ||| | || | Sbjct 2821 AGTTCTTGAGCGTGTCATAGATACCCTCGATGGAGTCATCCTTCATAGCAAGCAAGAAGC 2762 Query 54402 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461 | || | || ||||| || || || || || ||||| || | |||||||| | Sbjct 2761 ACGACGATAGCTGAGGACGAGGCGTACCAGCGTTGAACAAGGTTGGCGTCGCGTGCGTGA 2702 Query 54462 ACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATG 54519 | | || | || | ||| | ||| ||||||| || | | || || | ||| || Sbjct 2701 AGAAGTTCTGGGACATGTA-TTCGTAGGTCTCGAGCGCCGCCGCAATGTCTTCCTTG-TG 2644 Query 54520 AATTCCTACTGC-GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 54578 || || | ||| ||||||| | ||| ||||| || | || | | |||| | Sbjct 2643 GATACC-AATGCTCACACGCAAAATCATCTGCTGTGGACGCTCCATCACCTTGCCACCAA 2585 Query 54579 TTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 54638 | ||||||||| || || || | || || || ||||| |||| ||| ||||| | Sbjct 2584 TGCGCAGCAAGTACGACTTCTCAAGCGTCTTGAAGCCAAAGTAGTCGTACTCGAAGTCAC 2525 Query 54639 GTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 | |||| || ||| | ||||||| ||||||| Sbjct 2524 GGTCGTGGATGATAGCCGAGTTGAACATATCCTT 2491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593716226819520