Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq715 340 2e-88 seq56 132 5e-26 seq52 122 9e-23 >seq715 Length=275277 Score = 340 bits (376), Expect = 2e-88 Identities = 592/856 (69%), Gaps = 4/856 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||| ||||||||||| ||| |||||| | ||||| || || | ||| Sbjct 110642 GAGCCTCTGCTTCGCGAGAACCCAAACCGATTCGTGCTCTTCCCGATCCAGGAGAAGGAG 110701 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT- 116694 || ||| |||||||| ||||| || || |||||||| ||||||||| | || || Sbjct 110702 ATCTGGGATATGTACAAGAAGGCGGAAGCCAGCTTCTGGACGGTCGAGGAGATCGATCTT 110761 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || || | | | || ||||||| | ||| |||||| ||||| || ||||||||||| Sbjct 110762 GTGCACGACCTCAAG-GACTGGGGCAACATGACCGACAATGAGCGTCACTTCATCAAGCA 110820 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||| || || ||||| ||||| || || || || |||||||| || | | | || Sbjct 110821 CGTGCTCGCGTTCTTCGCTGCCAGTGATGGTATTGTGAACGAGAACCTTGCCATGAACTT 110880 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | | || || |||||| | || || || |||||||||||||| ||||| ||||| || Sbjct 110881 CAGCAACGAAGTCCAGGTGCCTGAAGCCCGCTGCTTCTACGGCTTCCAGATTGCCATTGA 110940 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934 |||| | |||||||||||||| ||| | || ||||||||| | | | | || Sbjct 110941 GAACATCCACTCGGAAATGTACTCGCTGTTGATTGACACGTACATCAAGGATGCCGCCGA 111000 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 |||| || ||||| |||||| ||||| || || ||||| | |||||||| | || Sbjct 111001 GAAGAACCACTTGTTCCGCGCCATTGAGACAATCCCATGCGTGCAGAAGAAGGCCAACTG 111060 Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAG-AGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 |||||| |||||| | | ||||| | ||||| || | ||||| | || ||||||| Sbjct 111061 GGCGCTCCGCTGGTGTGAC-TCAGAGAACGCCGCGTTTGCTGAGCGTGTCGTCGCCTTCG 111119 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 | ||| | ||||| ||||||| ||||| ||| | | | || ||||||||||| | Sbjct 111120 CTGCCATTGAGGGTATCTTCTTCTCGGGTTCGTTCTGCTCGGTCTTCTGGCTCAAGAAGC 111179 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 | || |||||||| ||||| | ||| |||||||| ||| | ||||| ||||| | Sbjct 111180 GTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTTATCAGTCGTGACGAAGGTCTCC 111239 Query 117174 ATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCG 117233 | || ||||| ||||| ||||| | ||| | | || | || | | | |||| Sbjct 111240 ACTGTGACTTCGCCTGCTTGCTCTACAACAAGCTTGTCAACCGTCTCCCAGAGTCGCGAA 111299 Query 117234 TCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGC 117293 || ||||| |||| || || ||| | |||||| || ||| ||| || |||| | Sbjct 111300 TCCACGAGATTGTCAGTGATGCCGTCACGATCGAGAAGGAGTTCGTCAAGGACTCGCTCC 111359 Query 117294 CGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCG 117353 | || || | || | || | | |||| || ||||||||||||||||| | Sbjct 111360 CAGTCGAGCTTATCGGTATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTCGCTG 111419 Query 117354 ACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACT 117413 | | || || | || || | | | | ||| ||||||| || | ||||| | |||| Sbjct 111420 ATCGTCTTCTCCACGCTCTTGGTGTCTCGAAGATCTACAACGCGTCTAACCCATTTGACT 111479 Query 117414 TTATGAACCTCATCTC 117429 ||| | | ||||| Sbjct 111480 GGATGGATATGATCTC 111495 >seq56 Length=164687 Score = 132 bits (146), Expect = 5e-26 Identities = 158/209 (76%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || || |||||||| |||||||| |||| ||||| || Sbjct 65522 AAAGATGCAGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACGCTCGATGTCGA-GC 65580 Query 40746 CACCG-ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 || || ||||| | | |||| ||||| | || || | ||||| || || || || | Sbjct 65581 CATCGGACAGCATTGACAACG-TCAAGCAGAAGATCCAGGACAAGGAAGGAATTCCACCA 65639 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || || |||| ||| ||||| ||||| || |||| ||||| ||| ||| Sbjct 65640 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGAC 65699 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||||| | || |||| Sbjct 65700 TACAACATCCAGAAGGAGTCGACCTTGCA 65728 >seq52 Length=165522 Score = 122 bits (134), Expect = 9e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||| | ||||| || || ||||| | |||||||| | Sbjct 28794 AAGATGCAGATCTTCGTGAAGACGTTGACGGGTAAGACGATCACGCTTGACGTCGAGCCT 28853 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | || |||| | ||| | || || | ||||| ||||| || || | || Sbjct 28854 TCGGACTCGATTGACAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCTCCAGA 28912 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| ||| | |||| || ||||| ||||| || |||| ||||||||| ||||| Sbjct 28913 TCAGCAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTCTCGGACTA 28972 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | ||| |||| | ||| | |||||| | || || Sbjct 28973 CAACATCCAGAAGGAGTCTACGTTGCACTTGGTGCTCCGCTTGCGTGGTGG 29023 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||||||||| ||||| || | |||||||| | Sbjct 10830 AAGATGCAGATCTTCGTCAAGACACTCACGGGCAAGACCATTACGTTGGACGTCGAGCCT 10771 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | || || | ||||| | || || | ||||| || ||||| || | || Sbjct 10770 TCGGACTCGATTGACAATG-TCAAGCAGAAGATCCAGGACAAGGAAGGCATTCCTCCAGA 10712 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| ||| | |||| || || || ||||| || |||| || |||||| ||||| Sbjct 10711 TCAGCAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTA 10652 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | ||| |||| | ||| | ||| | | ||||| Sbjct 10651 CAACATCCAGAAGGAGTCTACGTTGCACTTGGTGCTCCGCCTTCGTGGCGG 10601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214537266240