Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq56 118 9e-22 seq52 104 2e-17 seq125 91.5 1e-13 >seq56 Length=164687 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || |||||||| || | ||||| ||||| Sbjct 65735 CACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTC 65676 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| ||||||||||| || || || || || |||||||| Sbjct 65675 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTG 65616 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | | |||||| |||||| |||| || | || || Sbjct 65615 GATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAGCGTGATGGTCTT 65556 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||||||| || ||||| |||||||| Sbjct 65555 GCCCGTCAGAGTCTTCACAAAGATCTGCAT 65526 >seq52 Length=165522 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | |||||||| || || |||||||| || | ||||| ||||| Sbjct 29006 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCGTCCTC 28947 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || ||||| |||| | ||||||||||| ||||| || ||||||||||| Sbjct 28946 GAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTG 28887 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | | ||||| |||||| || | || | ||| || Sbjct 28886 GATCTTCTGCTTCACGTTGTCAATCGAGTCCGAAGGCTCGACGTCAAGCGTGATCGTCTT 28827 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || || |||||||| Sbjct 28826 ACCCGTCAACGTCTTCACGAAGATCTGCAT 28797 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | |||||||| || || |||||||| || | || || ||||| Sbjct 10618 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTC 10677 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || ||||| |||| | ||||||||||| ||||| ||||| |||||||| Sbjct 10678 GAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTG 10737 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | | ||||| |||||| || | || | || || Sbjct 10738 GATCTTCTGCTTGACATTGTCAATCGAGTCCGAAGGCTCGACGTCCAACGTAATGGTCTT 10797 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || || || |||||||| Sbjct 10798 GCCCGTGAGTGTCTTGACGAAGATCTGCAT 10827 >seq125 Length=98586 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||| || || ||||| |||||| Sbjct 38542 CACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAAGGTGCGGCCATCCTC 38601 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||||| || |||||| |||| |||||||||||||| ||||| || || Sbjct 38602 AAGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 38649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433826571989008