Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq598 176 1e-38 seq176 172 1e-37 seq715 111 3e-19 >seq598 Length=3624 Score = 176 bits (194), Expect = 1e-38 Identities = 701/1092 (64%), Gaps = 56/1092 (5%) Strand=Plus/Plus Query 248417 CCATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGG 248476 |||||||| | |||||| ||||| ||||| ||| |||| |||||||| ||| ||| Sbjct 2108 CCATGTACGTGCTCAAGCGCGACGGACGCAAGGAAGACGTCAAGTTCGACAAGATCACGG 2167 Query 248477 CGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCG 248536 |||| ||||| |||||||| ||||||||| | | ||| |||||| | | ||| Sbjct 2168 CGCGTATCAACAAGCTCTGCTATGGTCTGAACGCTGACTACGTCGACCCAATCAAGATCT 2227 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 | ||||| || | | || |||||| | || || || ||| | || |||| || | Sbjct 2228 CGCAGAAGGTGGTCGCTGGTGTCTACCCTGGTGTCACGACGTCCGAGTTGGATGAGTTGG 2287 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGA 248656 | || ||||||||||||||| |||| |||||| |||| ||| | |||| | Sbjct 2288 CGGCCGAGACGGCGGCGTACTGCGCGACGCAACACCCTGACTTCTCCAAGTTGGCGGCCC 2347 Query 248657 GGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCAT--GGC 248714 | ||| || |||| | | ||||| | ||||| || ||| || | ||| || Sbjct 2348 GCATCTCCATCTCCAACTTGCACAAGAACACGAACAAGCTCTTCTCGGACAACATTGAGC 2407 Query 248715 T----GAC--CTACATGC-------CTATGGGATGG------------TCGCCGATGACG 248749 | || | ||| || | || |||| |||| | ||| | Sbjct 2408 TCTTCTACCACAACAAGCACGAGAAGAACGGCATGGACGCGCCTTTGATCGCTGCTGATG 2467 Query 248750 T---CCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCA 248806 | | | | | |||| || |||| | | | | || || || | ||| | Sbjct 2468 TGTACGAGATCATCATGAAGAACAA---GGATATGTTCAACTCGGCTATCATCCACGACC 2524 Query 248807 AAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAA 248866 || || |||||||| | ||||| ||||| ||||| ||||| ||||| | || | Sbjct 2525 GTGACTTCGAGTACGACTACTTTGGCTTCAAGACGCTTGAGAAGTCGTACTTGCTGCGCA 2584 Query 248867 TTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTC 248926 ||| ||||||| | |||| || ||||| ||| | |||| ||| | || || | Sbjct 2585 TTGGTGGCAAGGTGATGGAGCGTCCACAGCAGATGATTTTGCGTGTGAGCATTGGTATCC 2644 Query 248927 ACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTG----AACGCTGG 248982 ||||||| ||||| | | | ||||||||| ||| |||| || | || Sbjct 2645 ACAAGGAAGACATTGCGGCGGCGCTCGAGACCTAC----GAATACATGTCCCAGAACTTC 2700 Query 248983 ATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTC 249041 | || || || || || || | |||||||| ||||| | || | |||||| || Sbjct 2701 TTCACGCACGCGACGCCAACCTTGTTCAACGCTGGTACGCCTCGTC-CTCAGCTATCGTC 2759 Query 249042 GTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACA 249101 |||||| | ||||| ||| | || ||||| |||| || || ||||||||||| || | Sbjct 2760 GTGCTTCTTGCTTGCTATGAAGGATGACTCCATCGAGGGTATCTATGACACGCTCAAGAA 2819 Query 249102 GACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAG- 249160 || || || || | || || || |||||| || | | ||||||||| | Sbjct 2820 CTGCGCTTGCATCTCCAAGTGGGCCGGTGGTATCGGTGTCAGCATGCACAACATCCGTGC 2879 Query 249161 --CGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTG-ATGGTATCGTACCCCTCC 249217 | || || ||||| ||||| || || || | ||||| |||| || | Sbjct 2880 CACTAACAGT---TACATTCGCGGTACGAA-CGGATCGTCGAATGGTCTCGTTCCAATGT 2935 Query 249218 TTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGT 249274 | || || | ||| || | | | | |||||| ||| || || ||||| | Sbjct 2936 TGCGTGTGTTCAACGACACGGCTCGCTACGTTGACCAGGGCGGAGGCAAGCGCAAGGGTT 2995 Query 249275 CGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAA 249334 |||||||||| || ||||| |||||||| || || || |||||| |||||||||| | Sbjct 2996 CGTTCGCCATCTACTTGGAGCCATGGCACGCGGACATCTTCGAGTTCTTGGACTTGAAGA 3055 Query 249335 AGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCG 249394 ||||| |||| || |||||| | || ||||| | ||||||| ||||| || | | Sbjct 3056 AGAACCACGGTAATGAGCTCCACCGTGCTCGTGATTTATTCTACGCGTTGTGGATCCCAG 3115 Query 249395 ACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTT-TCTCCGTCCGAC 249453 | ||||||||| || || | | ||||||| |||| | || || | ||| ||| Sbjct 3116 ATTTGTTCATGAAGCGTGTGGAATCGAACGGCGACTGGA-GTTTGTTCTGCCCGAACGAG 3174 Query 249454 GCCCCGGACCTC 249465 ||||| | |||| Sbjct 3175 GCCCCTGGCCTC 3186 >seq176 Length=73234 Score = 172 bits (190), Expect = 1e-37 Identities = 427/636 (67%), Gaps = 19/636 (3%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| |||||||| | ||||| ||||| |||||||| |||||||||| || ||| Sbjct 72137 GATTTTGAGTACGACTACTTTGGCTTCAAGACGCTGGAACGATCGTATCTCTTCCGCATT 72196 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 |||||||| | |||| || ||||| ||| | | || ||| | |||| || ||| Sbjct 72197 AATGGCAAGGTGATGGAGCGTCCACAGCAGATGATCTTACGCGTGTGTATCGGCATCCAC 72256 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 || || || || | | | || ||| |||| | ||| || ||| | || Sbjct 72257 AAAGAAGATATCGCCGGTGCTCTTCAGATGTACGACTACATGTCCCAAGGCTTCTTCACT 72316 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAA-CAATCAGCTGAGCTCGTGCTT 249047 || | | |||| || || |||||| | ||||| | || | |||| || ||||| || Sbjct 72317 CACGGCTCACCAACTCTTTTCAACTCGGGTAC-GCCACGCCCTCAGTTGTCGTCGTG-TT 72374 Query 249048 TCTT-CTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGG 249106 |||| ||||||||| | || ||||| | || || || || |||||||| || | | | Sbjct 72375 TCTTGCTTGCCATGAAGGATGACTCCATTGAGGGTATCTACGACACGCTCAAGAA--CTG 72432 Query 249107 CGAAGATTTCT--AAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGA- 249163 || | | ||| || | || || || |||||| || | ||||||||| || | Sbjct 72433 CGCATCTATCTCCAAGTGGGCCGGTGGCATCGGTATCAGTATGCACAACATCCGTGCCAC 72492 Query 249164 --AGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGA-TGGTATCGTACCCCTCCTTC 249220 | ||| |||| ||||| || || || || |||| |||| || | | | Sbjct 72493 TAACAGTT---ACATTCGCGGTACGAACGGA-TCGTCGAATGGTCTCGTTCCAATGTTGC 72548 Query 249221 GATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGT 249277 | || | ||| || | | | | |||||| ||| || || ||||| |||| Sbjct 72549 GTGTGTTCAACGACACGGCTCGCTACGTTGACCAGGGCGGAGGCAAGCGCAAGGGTTCGT 72608 Query 249278 TCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGA 249337 ||||||| || ||||| |||||||| || || || |||||| |||||||||| |||| Sbjct 72609 TCGCCATCTACTTGGAGCCATGGCACGCGGACATCTTCGAGTTCTTGGACTTGAAGAAGA 72668 Query 249338 ACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACT 249397 || |||| || |||||| | || ||||||||||| ||||| ||||| || | || | Sbjct 72669 ACCACGGTAATGAGCTCCATCGTGCTCGTGACCTCTTTTACGGGTTGTGGATCCCAGATT 72728 Query 249398 TGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGA 249433 |||||||| || || |||| |||| || |||| Sbjct 72729 TGTTCATGAAGCGTGTGGAGGCGAACGGTGAATGGA 72764 Score = 84.2 bits (92), Expect = 5e-11 Identities = 183/274 (67%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 248417 CCATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGG 248476 |||||||| | |||||| ||||| || | ||| | || ||||||||| ||| | | Sbjct 71718 CCATGTACGTGCTCAAGCGAGACGGACGTCAGGAAGATGTCTCCTTCGACAAGATCACTG 71777 Query 248477 CGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCG 248536 | |||||| ||||||||| |||| ||| | | ||| ||| || | || ||| Sbjct 71778 CTCGCATCTCCAAGCTCTGTGATGGCCTGAACGCTGACTACGTTGACCCAGTCAAGATCA 71837 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 | ||||| || | | || |||||| | || || || ||| | || |||| || | Sbjct 71838 CACAGAAGGTGGTCGCTGGTGTCTACCCTGGTGTCACGACGTCCGAGTTGGATGAGTTGG 71897 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGA 248656 | || |||||||||||||| |||| |||||| |||| ||| | |||| | Sbjct 71898 CGGCCGAGACGGCGGCGTATTGCGCGACGCAACACCCTGACTTCTCCAAGTTGGCGGCCC 71957 Query 248657 GGATCGCCGTCTCAAGGCTTCACAAAGAAACGAA 248690 | ||| || |||| | | ||||| | ||||| Sbjct 71958 GCATCTCCATCTCCAACTTGCACAAGAACACGAA 71991 >seq715 Length=275277 Score = 111 bits (122), Expect = 3e-19 Identities = 263/388 (68%), Gaps = 22/388 (6%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || ||| |||| ||| |||| ||||| || || ||||||||||| || ||| | || Sbjct 250280 CTCCCGCATCTGCTCTTCTACGGGCCTCCAGGCACGGGCAAGACGTCGACGATCGTCGCC 250221 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACAT----GAGAGAGCG--CGTGC--TCGAGC 254112 |||| || |||| || |||| | ||| || ||| | ||| Sbjct 250220 GTGGCGCGTCAGTTGTTTGGTCC-----ACATTTCCGCAAGAACGGCCGTTTCTTGGAGT 250166 Query 254113 TGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGA-CTTTCTCC 254171 |||||||||| || || || || | | || || ||||| || |||||| |||| | Sbjct 250165 TGAACGCTTCCGATGATCGTGGTATCAAAGTGGTGCGCGAGAAAGTCAAGAGCTTTGCGC 250106 Query 254172 AAGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGAC 254231 ||| || |||| || | ||| ||||| || || |||||| || | | ||||| Sbjct 250105 AAGGTG-CGATCA-GTAGCTCCG--CCGGCATGCCTCCGTTCAAGATCATCGTGCTGGAT 250050 Query 254232 GAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCAC 254291 || || ||| | ||||| | ||||||||||| || || || || | |||||||| || Sbjct 250049 GAAGCCGACTCGATGACTGGTGACGCGCAGTCGGCGCTGCGTCGCATGATGGAGAACTAC 249990 Query 254292 TCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGC 254349 ||| || ||||| |||||||| | || |||||||| |||| ||||||| || Sbjct 249989 TCCAAGGTCACGCGCTTTTGCCTCATTTGTAACTACGTGAGTCG--TATCATCGAGCCAA 249932 Query 254350 TGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 | || || || || |||||||| || || Sbjct 249931 TTGCCTCGCGTTGTGCCAAGTTCCGCTT 249904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073756439474432