Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq176 196 4e-45 seq715 165 7e-36 seq56 113 4e-20 seq655 109 5e-19 >seq176 Length=73234 Score = 196 bits (216), Expect = 4e-45 Identities = 631/968 (65%), Gaps = 16/968 (2%) Strand=Plus/Minus Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 ||||||||| ||||| ||||| || || ||||| || |||||||| | | || Sbjct 73069 GGCGATCGACGCAAGGTTGCACACAGCGACCTCATCCGAATCTGTGTACTCGATCACCTC 73010 Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCA 23139 || | ||||| | ||||| || | || |||||| || ||||| Sbjct 73009 ACAGCACAAGTTGCTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCGACTTGCGATTCGC 72950 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 || ||||||||| ||||| |||||||| |||||||||| ||| ||||||| ||| || Sbjct 72949 CGCATCCTTGTACAGCATATACGGCGTACCCGTCTCGATCTGTGACTCGAGGATGGCGAA 72890 Query 23200 CCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGT 23258 ||| | |||||| | | ||| || ||| || || | || ||||| || Sbjct 72889 CCAGAGCTGCTGAGCACGGATG-GTCTTGCGAGCCTTTCCCTCAGCTTCATACTTGGCGT 72831 Query 23259 ACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACA 23318 |||||| || || || | || | || ||| || || | | || | || || | Sbjct 72830 ACAACGTCTCGAACTCCTCGCCCCAGCACTCGTAGAGACCTTGAGCTTCGTTTGGGCAGA 72771 Query 23319 TGAGACTCCACATTGA--GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAG 23376 | |||||| || | || || || || |||| || | ||| || ||||| | Sbjct 72770 ACAAACTCCA--TTCACCGTTCGCCTCCACACGCTTCATGAACAAATCTGGGATCCACAA 72713 Query 23377 AGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAA 23436 |||| || || || || || || ||| || ||| |||||| ||||| ||||| Sbjct 72712 CCCGTAAAAGAGGTCACGAGCACGATGGAGCTCATTACCGTGGTTCTTCTTCAAGTCCAA 72653 Query 23437 AAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTT 23496 || || || | |||||| ||||| ||||| | ||| | ||| |||| ||| | ||| Sbjct 72652 GAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAACGAACCCTTGCGCTT 72593 Query 23497 ATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAG 23556 |||||||| || ||||| || ||||||| |||| |||| | | ||| || ||||| Sbjct 72592 GCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACACGCAACATTGGAACGAG 72533 Query 23557 ACCGTTGGACGCGCCGCCTACGC-CCGCCACACTCGAACCTTTTG---CTCGAACGTTGT 23612 ||| || |||| ||| | || |||| | | ||| || | | || | ||||| Sbjct 72532 ACCATTCGACGATCCG--TTCGTACCGCGAATGT--AACTGTTAGTGGCACGGATGTTGT 72477 Query 23613 GAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGT 23672 | | || ||| ||||| ||| || | || || || ||||| | || || |||| Sbjct 72476 GCATACTGATACCGATGCCACCGGCCCACTTGGAGATAGATGCGCAGTTCTTGAGCGTGT 72417 Query 23673 CGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCG 23732 ||||||| ||||| ||| ||| || || | || | |||||||||||| |||| || | Sbjct 72416 CGTAGATACCCTCAATGGAGTCATCCTTCATGGCAAGCAAGAAACACGACGACAACTGAG 72357 Query 23733 CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACA 23792 |||||| | | ||| || || || | |||| || ||| | || | |||| Sbjct 72356 GGCGTGGCGTACCCGAGTTGAAAAGAGTTGGTGAGCCGTGAGTGAAGAAGCCTTGGGACA 72297 Query 23793 T-TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACG 23851 | ||| | |||| | | | || | | || || ||| ||| || ||||| ||| Sbjct 72296 TGTAG-TCGTACATCTGAAGAGCACCGGCGATATCTTCTTTGTGGATGCCGATACACACG 72238 Query 23852 CGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAA 23911 || | ||||| | || || | ||| | | ||| ||||| ||| ||||| || Sbjct 72237 CGTAAGATCATCTGCTGTGGACGCTCCATCACCTTGCCATTAATGCGGAAGAGATACGAT 72178 Query 23912 CGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCC 23971 |||| || ||| || || ||||| ||||| || | ||| || || || || | |||||| Sbjct 72177 CGTTCCAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAATCGCGCTCATGGATGATGGCC 72118 Query 23972 GAATTCAA 23979 || || || Sbjct 72117 GAGTTGAA 72110 >seq715 Length=275277 Score = 165 bits (182), Expect = 7e-36 Identities = 550/839 (66%), Gaps = 24/839 (3%) Strand=Plus/Plus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || || ||| | |||||||| ||||| ||||| || ||||| ||||| || | || Sbjct 110699 GAGATCTGGGATATGTACAAGAAGGCGGAAGCCAGCTTCTGGACGGTCGAGGAGATCGAT 110758 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || | || || | || |||| | | | || |||| | | || || || Sbjct 110759 CTTGTGCACGACCTCAAGGACTGGGGCAACATGACCGACAATGAGCGTCACTTCATCAAG 110818 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| | ||||| ||||| || ||||||||||| |||||||| | | | | || Sbjct 110819 CACGTGCTCGCGTTCTTCGCTGCCAGTGATGGTATTGTGAACGAGAACCTTGCC--ATGA 110876 Query 57747 TTTTCA-CAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 |||| ||| ||||| || ||| | || || | ||||| ||||| || || | |||| Sbjct 110877 ACTTCAGCAACGAAGTCCAGGTGCCTGAAGCCCGCTGCTTCTACGGCTTCCAGATTGCCA 110936 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 |||| ||| | || || |||||||| ||||| | || || |||||| | ||||| || Sbjct 110937 TTGAGAACATCCACTCGGAAATGTACTCGCTGTTGATTGACACGTACATCAAGGATGCCG 110996 Query 57865 ACGAGAAACGTA-GAC-TGTTCAACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGG 57921 |||||| | | || ||||| ||| || || ||||| || ||| | ||||||| Sbjct 110997 CCGAGAA--GAACCACTTGTTCCGCGCCATTGAGACAATCCCATGCG-TGCAGAAGAAGG 111053 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981 | | ||| | || ||| | | | ||| |||| || ||| | | ||| Sbjct 111054 CCAACTGGGCGCTCCGCTGGTGTGACTCAGAGAACGCCGCGTTTGCTGAGCGTGTCGTCG 111113 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGG-CAGCTTTGCGGCAATATTTTGGATG 58040 | ||||| ||| | || ||||| ||||| ||||| | | ||| | | || ||| | Sbjct 111114 CCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTCGTTCTGC-TCGGTCTTCTGGCTC 111172 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| || || || ||||| ||||| | || |||||| | || || ||||| Sbjct 111173 AAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTTATCAGTCGTGACGAA 111232 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG--ACGC 58158 |||||||| ||| || || ||| | | ||| | ||||| ||||| | | Sbjct 111233 GGTCTCCACTGTGACTTCGCCTGCTTGCTCTACAACAAGCTTGTC----AACCGTCTCCC 111288 Query 58159 GGGATCGC--ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 | |||| ||| || ||| ||| || || ||| ||||||| || ||||| |||| Sbjct 111289 AGAGTCGCGAATCCACGAGATTGTCAGTGATGCCGTCACGATCGAGAAGGAGTTCGTCAA 111348 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 || | || || || | | ||||||||||| | | |||| ||||||| || Sbjct 111349 GGACTCGCTCCCAGTCGAGCTTATCGGTATGAACTCGGCGCTCATGTGCCAGTACATCGA 111408 Query 58277 GTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAA 58334 ||| || || || | ||| | | || || | | || || |||||| || Sbjct 111409 GTTCGTCGCTGATCGTCTTCTCCACGCTCTTGGTGTCTCGAAGATC--TACAACGCGTCT 111466 Query 58335 AATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || || ||||| | ||| || ||||||||||| |||||||||| ||||| ||||| || Sbjct 111467 AACCCATTTGACTGGATGGATATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAA 111525 >seq56 Length=164687 Score = 113 bits (124), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || ||||||||||| ||||| || ||||| |||| || || || Sbjct 65522 AAAGATGCAGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACGCTCGATGTCGAGCC 65581 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || ||||| | || | ||||| |||| || |||||||||||| | || || || Sbjct 65582 ATCGGACAGCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAAGGAATTCCACCAGA 65641 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||||||| || ||||| ||||| ||| | || ||| Sbjct 65642 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 65681 >seq655 Length=2523 Score = 109 bits (120), Expect = 5e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 ||||||||| || ||||| || ||||| || || | ||||| || || ||||| || Sbjct 2233 CTTGTCCACAGTGAACTGGATCGCGTTCGCCTTTGGCTGCGTGCGGAGGTAGTACATACC 2292 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||||| ||| ||||||| || || || || ||||||||||| || | |||| Sbjct 2293 TGTCTTCAGTCCCTTCTTCCATGCATAGAAGTGCATCGACGTCAACTTACTGATCGTCGG 2352 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | || | ||| |||| |||||||||||| ||| || || || || |||||||| Sbjct 2353 CTCAGCAATATGCACGTTGAGCGACTGACTCTGGCAGATGAAAGCACCACGGTCGGCGGC 2412 Query 22285 CAT 22287 ||| Sbjct 2413 CAT 2415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762365814080