Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25]
724 sequences; 35,934,203 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq715 161 1e-34
seq598 96.9 5e-15
>seq715
Length=275277
Score = 161 bits (178), Expect = 1e-34
Identities = 402/604 (67%), Gaps = 11/604 (2%)
Strand=Plus/Minus
Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015
||| || ||||| || ||||| ||||| ||||| | ||| || || ||||| || || |
Sbjct 111259 CAAGCAGGCGAAGTCACAGTGGAGACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCT 111200
Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAA 50074
||| || ||||| || |||||||| || ||||| || | || ||| || || || || |
Sbjct 111199 GAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCGA-GCAGAACGAACCCGAGA 111141
Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT 50134
||||||| || || | || || ||||| || | | ||| || | |||| | || |
Sbjct 111140 AGAAGATACCCTCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTC-T 111082
Query 50135 GTATC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190
| || || | ||||| | ||||||||| | || || || || || || |||
Sbjct 111081 GAGTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATG 111022
Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250
|| || | | ||| || || ||| || | || || || ||||| ||
Sbjct 111021 GCGCGGAACAAGTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAG 110962
Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310
||||||||||| || ||||| |||||||| ||||| || |||||||| || | || ||
Sbjct 110961 TACATTTCCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCA 110902
Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGTCAC 50368
| | ||| ||||| | | || ||||| || | || || ||||| || || ||||
Sbjct 110901 GGCACCTGGACTTCGTTGCTGAA--GTTCATGGCAAGGTTCTCGTTCACAATACCATCAC 110844
Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT 50428
|||| || || ||||| | || || || || || || || ||| || | ||
Sbjct 110843 TGGCAGCGAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCATGTTGC 110784
Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488
||| || |||| || | | ||| | || || || ||||| || || || |
Sbjct 110783 CCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCG 110724
Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTG 50548
|||| || ||||||| |||||| || | | ||||| ||||| | || |||| ||||
Sbjct 110723 CCTTCTTGTACATATCCCAGATCTCCTTCTCCTGGATCGGGAAGAGCACGAATCGGTTTG 110664
Query 50549 GATT 50552
| ||
Sbjct 110663 GGTT 110660
>seq598
Length=3624
Score = 96.9 bits (106), Expect = 5e-15
Identities = 367/571 (64%), Gaps = 4/571 (1%)
Strand=Plus/Minus
Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073
||||| || | || | |||| | | || || | ||||| || |||||||| |||||
Sbjct 3059 TTCTTCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCG 3000
Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133
| ||| || ||| ||| ||||| || | ||| | ||| |||| || | ||
Sbjct 2999 AACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACA 2940
Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193
| ||||||||||| | |||||| || | || || || ||| || || || | ||
Sbjct 2939 CGCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGTG 2880
Query 80194 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253
||||| || || || | ||| || || || ||| || ||||| | |||||
Sbjct 2879 GCACGGATGTTGTGCATGCTGACACCGATACCACCGGCCCACTTGGAGATGCAAGCGCAG 2820
Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313
|| | ||| |||||||| ||||| ||| ||||| |||| ||| | || ||
Sbjct 2819 TTCTTGAGCGTGTCATAGATACCCTCGATGGAGTCATCCTTCATAGCAAGCAAGAAGCAC 2760
Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373
|| | || ||||| || || || || || ||||| || | |||||||| ||
Sbjct 2759 GACGATAGCTGAGGACGAGGCGTACCAGCGTTGAACAAGGTTGGCGTCGCGTGCGTGAAG 2700
Query 80374 CATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAA 80431
| || | |||| ||| | ||| ||||| | || | | || || | ||| || |
Sbjct 2699 AAGTTCTGGGACATGTA-TTCGTAGGTCTCGAGCGCCGCCGCAATGTCTTCCTTG-TGGA 2642
Query 80432 TTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 80491
| || | ||||||| | ||| ||||| || | || | | |||| | ||
Sbjct 2641 TACCAATGCTCACACGCAAAATCATCTGCTGTGGACGCTCCATCACCTTGCCACCAATGC 2582
Query 80492 TCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 80551
|| |||||| || || || | || || || ||||| |||| ||| ||||| || |
Sbjct 2581 GCAGCAAGTACGACTTCTCAAGCGTCTTGAAGCCAAAGTAGTCGTACTCGAAGTCACGGT 2522
Query 80552 CGTAAATAATAACCGAGTTGAGTTTATCCTT 80582
||| || ||| ||||||||| |||||||
Sbjct 2521 CGTGGATGATAGCCGAGTTGAACATATCCTT 2491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718262299667360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |