Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq715 161 1e-34 seq598 96.9 5e-15 >seq715 Length=275277 Score = 161 bits (178), Expect = 1e-34 Identities = 402/604 (67%), Gaps = 11/604 (2%) Strand=Plus/Minus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 ||| || ||||| || ||||| ||||| ||||| | ||| || || ||||| || || | Sbjct 111259 CAAGCAGGCGAAGTCACAGTGGAGACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCT 111200 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAA 50074 ||| || ||||| || |||||||| || ||||| || | || ||| || || || || | Sbjct 111199 GAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCGA-GCAGAACGAACCCGAGA 111141 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT 50134 ||||||| || || | || || ||||| || | | ||| || | |||| | || | Sbjct 111140 AGAAGATACCCTCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTC-T 111082 Query 50135 GTATC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 | || || | ||||| | ||||||||| | || || || || || || ||| Sbjct 111081 GAGTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATG 111022 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || || | | ||| || || ||| || | || || || ||||| || Sbjct 111021 GCGCGGAACAAGTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAG 110962 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||||||||| || ||||| |||||||| ||||| || |||||||| || | || || Sbjct 110961 TACATTTCCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCA 110902 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGTCAC 50368 | | ||| ||||| | | || ||||| || | || || ||||| || || |||| Sbjct 110901 GGCACCTGGACTTCGTTGCTGAA--GTTCATGGCAAGGTTCTCGTTCACAATACCATCAC 110844 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT 50428 |||| || || ||||| | || || || || || || || ||| || | || Sbjct 110843 TGGCAGCGAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCATGTTGC 110784 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 ||| || |||| || | | ||| | || || || ||||| || || || | Sbjct 110783 CCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCG 110724 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTG 50548 |||| || ||||||| |||||| || | | ||||| ||||| | || |||| |||| Sbjct 110723 CCTTCTTGTACATATCCCAGATCTCCTTCTCCTGGATCGGGAAGAGCACGAATCGGTTTG 110664 Query 50549 GATT 50552 | || Sbjct 110663 GGTT 110660 >seq598 Length=3624 Score = 96.9 bits (106), Expect = 5e-15 Identities = 367/571 (64%), Gaps = 4/571 (1%) Strand=Plus/Minus Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073 ||||| || | || | |||| | | || || | ||||| || |||||||| ||||| Sbjct 3059 TTCTTCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCG 3000 Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133 | ||| || ||| ||| ||||| || | ||| | ||| |||| || | || Sbjct 2999 AACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACA 2940 Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193 | ||||||||||| | |||||| || | || || || ||| || || || | || Sbjct 2939 CGCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGTG 2880 Query 80194 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253 ||||| || || || | ||| || || || ||| || ||||| | ||||| Sbjct 2879 GCACGGATGTTGTGCATGCTGACACCGATACCACCGGCCCACTTGGAGATGCAAGCGCAG 2820 Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313 || | ||| |||||||| ||||| ||| ||||| |||| ||| | || || Sbjct 2819 TTCTTGAGCGTGTCATAGATACCCTCGATGGAGTCATCCTTCATAGCAAGCAAGAAGCAC 2760 Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 || | || ||||| || || || || || ||||| || | |||||||| || Sbjct 2759 GACGATAGCTGAGGACGAGGCGTACCAGCGTTGAACAAGGTTGGCGTCGCGTGCGTGAAG 2700 Query 80374 CATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAA 80431 | || | |||| ||| | ||| ||||| | || | | || || | ||| || | Sbjct 2699 AAGTTCTGGGACATGTA-TTCGTAGGTCTCGAGCGCCGCCGCAATGTCTTCCTTG-TGGA 2642 Query 80432 TTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 80491 | || | ||||||| | ||| ||||| || | || | | |||| | || Sbjct 2641 TACCAATGCTCACACGCAAAATCATCTGCTGTGGACGCTCCATCACCTTGCCACCAATGC 2582 Query 80492 TCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 80551 || |||||| || || || | || || || ||||| |||| ||| ||||| || | Sbjct 2581 GCAGCAAGTACGACTTCTCAAGCGTCTTGAAGCCAAAGTAGTCGTACTCGAAGTCACGGT 2522 Query 80552 CGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 ||| || ||| ||||||||| ||||||| Sbjct 2521 CGTGGATGATAGCCGAGTTGAACATATCCTT 2491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718262299667360