Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq715 174 2e-38 seq43 143 4e-29 >seq715 Length=275277 Score = 174 bits (192), Expect = 2e-38 Identities = 560/850 (66%), Gaps = 32/850 (4%) Strand=Plus/Plus Query 125016 GACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGAT 125075 || || ||||| |||||||| ||||| | ||| ||| ||||||||||| ||| ||||| Sbjct 110699 GAGATCTGGGATATGTACAAGAAGGCGGAAGCCAGCTTCTGGACGGTCGAGGAGATCGAT 110758 Query 125076 CT-GTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTAT 125134 || || || | |||| | || |||| | |||| || | |||||| | || || Sbjct 110759 CTTGTGCACG-ACCTCAAGGACTGGGGCAACA---TGACCGACAATGAGCGTCACTTCAT 110814 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 |||| | | || ||||| || | | ||||| || || ||||| || || || | Sbjct 110815 CAAGCACGTGCTCGCGTTCTTCGCTGCCAGTGATGGTATTGTGAACGAGAACCT--TGCC 110872 Query 125195 ACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATC 125252 | || || | | | ||| | || || | ||||| ||||| ||||| || Sbjct 110873 ATGAACTTCAGCAACGAAGTCCAGGTGCCTGAAGCCCGCTGCTTCTACGGCTTCCAGATT 110932 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312 ||||||||| | ||||||||||||||||| ||||||||| |||||| ||| Sbjct 110933 GCCATTGAGAACATCCACTCGGAAATGTACTCGCTGTTGATTGACACGTACATCAAGGAT 110992 Query 125313 -CCGCAACGTAAA--CACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 |||| | | | ||| || || ||| || || || | || | | | || Sbjct 110993 GCCGCCGAGAAGAACCACTTGTTCCG---CGCCATTGAGACAATCCCATGCGTGCAGAAG 111049 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 ||||| | |||| | | || ||| || || || | ||| || || | | Sbjct 111050 AAGGCCAACTGGGCGCTCCGCTGGTGTGACTCAGAGAACGCCGCGTTTGCTGAGCGTGTC 111109 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA-GTTTTGCGGCCATCTTTTG 125488 || || ||||| ||| | ||||| |||||||| |||||| ||| ||| | |||| || Sbjct 111110 GTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTCGTTCTGCT-CGGTCTTCTG 111168 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||||||||| || |||||||| || || | | |||||| |||| ||| || Sbjct 111169 GCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTTATCAGTCGTGA 111228 Query 125549 CGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTC--CCGAG 125606 ||| || || ||||||||||| ||| | || || | |||| | || ||| ||| Sbjct 111229 CGAAGGTCTCCACTGTGACTTCGCC-TGCT--TGCTCTACAACAAGCT-TGTCAACCGTC 111284 Query 125607 TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAA 125666 | |||| | | || || | | ||||| | |||||||| | ||| || | Sbjct 111285 T-----CCCAGAGTCGCGAA--TCCACGAGATTGTCAGTGATGCCGTCACGATCGAGAAG 111337 Query 125667 GAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTGGCATGAACTGCAAGCTAATGTG 125725 ||||| | | || || || || ||| ||| | || || ||||||| ||| ||||| Sbjct 111338 GAGTTCGTCAAGGACTCGCTCCCAGTCGAGC-TTATCGGTATGAACTCGGCGCTCATGTG 111396 Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTA 125785 | ||||||| ||||| || || |||||||| || ||| | || | ||||| || Sbjct 111397 CCAGTACATCGAGTTCGTCGCTGATCGTCTTCTCCACGCTCTTGGTGTCTCGAAGATCTA 111456 Query 125786 CAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTT 125845 |||||| || || ||||| | ||| | || || || |||| ||||||||||| Sbjct 111457 CAACGCGTCTAACCCATTTGACTGGATGGATATGATCTCGCTCCAGGGCAAGACCAACTT 111516 Query 125846 TTTCGAGAAG 125855 ||||||||| Sbjct 111517 CTTCGAGAAG 111526 >seq43 Length=178053 Score = 143 bits (158), Expect = 4e-29 Identities = 286/412 (69%), Gaps = 10/412 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 |||||||| || |||||||| || ||||||||| | |||| || |||||||| || Sbjct 80860 GGCGATCTCGGTCCAGTGTATGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTATACCGAT 80919 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184 ||| | | || || | ||||||||||| ||||| | || || |||| ||| | Sbjct 80920 ATGCACGCC-GATTACACCGGTCAGGGTGTGGATCAGCTCGCTGAGG-TCATCCACAAGC 80977 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | |||||||| || | || || | || | ||| |||||||||| ||||| | Sbjct 80978 TTAAGACCAACCCGAACGACCGGCGTATTCTCTTGTCTGCATGGAATCCAGCAGACCTCA 81037 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGA-TGGCA 70301 | | ||||| || || ||||| ||| |||| || ||||| ||| ||| ||| |||| Sbjct 81038 AGGAGATGGCGCTCCCTCCGTGCCACATGTTCTGC-CAGTTCTACGTCG--CGAATGGCG 81094 Query 70302 AATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACA 70361 | | || ||| |||||| ||| | || ||||||||||||||||| || ||||| | Sbjct 81095 AGCTCTCGTGCCAAATGTACCAGCGATCGGCTGACATGGGCCTCGGTGTGCCGTTTAATA 81154 Query 70362 TTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACG 70421 | || || || | ||||||| | |||| ||||| | | || || || || | Sbjct 81155 TCGCCAGTTACGCGTTGTTGACCCGATTGATCGCTCAGGTCGCTGGGCTCAAGGCCGGTG 81214 Query 70422 AGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 | ||||| || |||||| || || ||| | || || |||||| ||||||| Sbjct 81215 ACTTCGTCCATGTCATTGGTGATGCACACATCTACTTGAATCACCTCGAGCC 81266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741052493414240