Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq52 91.5 1e-13 >seq52 Length=165522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||||||||||||||||| || || ||||| |||| | || | ||||||| Sbjct 10618 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTC 10677 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | || | || ||||||||| || | ||| || ||||| Sbjct 10678 GAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTG 10737 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | | | | | || |||||| || | |||||||| || Sbjct 10738 GATCTTCTGCTTGACATTGTCAATCGAGTCCGAAGGCTCGACGTCCAACGTAATGGTCTT 10797 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || | || ||||| || || ||||| || Sbjct 10798 GCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 10830 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 ||||| || ||||| | | ||||| |||||||||||||||||| || || ||||| ||| Sbjct 29026 TTTCCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCC 28967 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | | || ||||||| ||||| || || ||| | || | || ||||||||| Sbjct 28966 GAGAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGATCTGGA 28907 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | ||||| ||||| || ||||| || || | | | | | || |||||| Sbjct 28906 GGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATCGAGTCCGAAGGCTCG 28847 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | || || || ||||| || || || || || || || ||||| || Sbjct 28846 ACGTCAAGCGTGATCGTCTTACCCGTCAACGTCTTCACGAAGATCTGCATCTT 28794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414569141913256