Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_005885.1 Length=58638 Score E Sequences producing significant alignments: (Bits) Value seq178 98.7 4e-16 >seq178 Length=71910 Score = 98.7 bits (108), Expect = 4e-16 Identities = 192/283 (68%), Gaps = 17/283 (6%) Strand=Plus/Minus Query 53536 GTACGGGCCGAGTTCAACACGGTGTTCCCCGGCCGGGATAAGGCCACGGACGGCTCGGTG 53595 || || || || |||||| ||| |||||| || || ||| || | || |||| | | Sbjct 50569 GTCCGTGCAGAATTCAACGCGGCATTCCCCAAGCGCGACAAGTCCTCCGATGGCTGGATC 50510 Query 53596 GGCGACCTCGCTCACCAGACCGGCTCCTCCGGCCACAACCCGGACCGGACCGGCAAGGCG 53655 |||||| || ||||| |||| ||||||| ||| || || || || Sbjct 50509 GGCGACACGGCCCACCAATCCGGA----------ACAACCCCGACATCACGGGTAACGCC 50460 Query 53656 GAGTACAAGGACGGGGACAGCAAGGACGAGGTTCGCGCCATCGACGTGGACCGCGACCTG 53715 | |||||||||||| |||| |||| |||| || || ||||||||||||||| ||| || Sbjct 50459 GGGTACAAGGACGGCGACAACAAGAACGAAGTGCGTGCCATCGACGTGGACGCTGACTTG 50400 Query 53716 ATCCCGGGCTCGGCCACGGACTGGATGGAACTCGTCATCCAGTACCTGATCA--AGAAGG 53773 | | | ||||| | | | |||||| ||| |||||||| || ||| | || | Sbjct 50399 AAGTCCGACTCGGGC---GTCACCATGGAAGACGTGGTCCAGTACATGCTCACCAAAATG 50343 Query 53774 CCAGGGCCGGGGGGTACATCCCGTTCCGGTACATCATCTACAA 53816 | | | || |||||| |||||||| ||| | |||| ||| Sbjct 50342 C--GTGGTGGTACGTACATGCCGTTCCGCTACTTGATCTTCAA 50302 Score = 89.7 bits (98), Expect = 2e-13 Identities = 285/440 (65%), Gaps = 24/440 (5%) Strand=Plus/Plus Query 53536 GTACGGGCCGAGTTCAACACGGTGTTCCCCGGCCGGGATAAGGCCACGGACGGCTCGGTG 53595 || || || || |||||| || |||||| || || ||| || |||| |||| | | Sbjct 63242 GTCCGTGCTGAATTCAACGTGGCTTTCCCCAAGCGTGACAAGTCCTCGGATGGCTGGATC 63301 Query 53596 GGCGACCTCGCTCACCAGACCGGCTCCTCCGGCCACAACCCGGACCGGACCGGCAAGGCG 53655 ||||| ||| || || | | || || |||||||| ||| | || | | Sbjct 63302 GGCGATGCCGCCCATCAAAAGGAAAAGTCGGGACACAACCCCGACATCTCGGGTACTCCC 63361 Query 53656 GAGTACAAGGACGGGGACAGCAAGGACGAGGTTCGCGCCATCGACGTGGACCGCGACCTG 53715 |||||||||||||| || |||||| |||| || || ||||||||||| ||| ||| || Sbjct 63362 GAGTACAAGGACGGCGATAGCAAGAACGAAGTGCGTGCCATCGACGTCGACTCGGACTTG 63421 Query 53716 ATCCCGGGCTCGGCCACGGACTGGATGGAACTCGTCATCCAGTACCTGATCAAGAAGGCC 53775 | | | ||||| | | |||||| |||| | |||||| || ||| ||| Sbjct 63422 AAGTCCGACTCGGGC---GTTACCATGGAAGACGTCGTGCAGTACTTGCTCACCAAGTTG 63478 Query 53776 AGGGCCGGGGGGTACATCCCGTTCCGGTACATCATCTACAAGGGCCGGATCTGG-GCACG 53834 | | || |||||| |||||||| ||| | |||| ||| || || ||| ||| | Sbjct 63479 CGTGGTGGCACGTACATGCCGTTCCGCTACTTGATCTTCAACAAGCGCATTTGGAGCAAG 63538 Query 53835 CTCGGACGGCTGGCAGACCCGGACGTACACCGGCTCGAACAAGCACGACAAGCAC--GCC 53892 | || |||| || | ||||||| || ||| |||| | ||||| || Sbjct 63539 AGC-AACAACTGGAAGCAAGAGGCGTACACGGGTGCGAGTCCGCACACCGAGCACCTGCA 63597 Query 53893 CATTTCTCGGGCGACTA---------------CACCCAGACCGCCGACGAGTGGACGGGC 53937 |||| || |||||||| ||| ||| |||||||||||| | || Sbjct 63598 CATT--TCCGGCGACTATGGCACAGCTGAACGTACCGAGAAGGCCGACGAGTGGTCTGGT 63655 Query 53938 TCGCTGGGCCTGGCCTCGGT 53957 ||||||| |||||||||| Sbjct 63656 AAGCTGGGCTTGGCCTCGGT 63675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187518387796800