Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq52 122 8e-23 seq56 111 1e-19 >seq52 Length=165522 Score = 122 bits (134), Expect = 8e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| || | ||| || | |||||||||||| ||||| ||||| || | ||| || || Sbjct 29024 TCCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCG- 28966 Query 94840 CATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | || || || ||||| ||||| || || ||||||| |||| |||||||||||| Sbjct 28965 -AGAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGATCTGGA 28907 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 |||||||| || ||||| | || || ||| ||| | | | | ||| | | ||| Sbjct 28906 GGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATCGAGTCCGAAGGCTCG 28847 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| |||||| || || || || | || ||||| ||||||||||| Sbjct 28846 ACGTCAAGCGTGATCGTCTTACCCGTCAACGTCTTCACGAAGATCTGCAT 28797 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||||||||| ||||| ||||| || | ||| || || | || | ||||| Sbjct 10618 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTC 10677 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || ||||||| |||| ||||||||||||||||| ||||| ||||| | Sbjct 10678 GAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTG 10737 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || |||||| | | | | ||| | | |||||||| | ||| ||||| || Sbjct 10738 GATCTTCTGCTTGACATTGTCAATCGAGTCCGAAGGCTCGACGTCCAACGTAATGGTCTT 10797 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||| Sbjct 10798 GCCCGTGAGTGTCTTGACGAAGATCTGCAT 10827 >seq56 Length=164687 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||||||||| || || ||||| || | ||| || || | ||| | ||||| Sbjct 65735 CACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTC 65676 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || ||| | ||||| | | ||||| ||||| ||||| ||||| ||||| | Sbjct 65675 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTG 65616 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||||| | | | |||| | | ||||| || | ||||||||| || Sbjct 65615 GATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAGCGTGATGGTCTT 65556 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTAC 95013 || || ||||| ||||||||||||||||| |||| Sbjct 65555 GCCCGTCAGAGTCTTCACAAAGATCTGCATCTTTAC 65520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448287142964640