Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq715 145 1e-29 seq176 84.2 3e-11 >seq715 Length=275277 Score = 145 bits (160), Expect = 1e-29 Identities = 306/453 (68%), Gaps = 9/453 (2%) Strand=Plus/Minus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| || ||||| || ||||| ||||| ||||| | ||| || || ||||| || || | Sbjct 111259 CAAGCAGGCGAAGTCACAGTGGAGACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCT 111200 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||| || ||||| || |||||||| || ||||| || | || ||| || || || || Sbjct 111199 GAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAA 111140 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG 33479 |||||| || || | ||||| ||||| | | | ||| || | ||||| | || || Sbjct 111139 GAAGATACCCTCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTC-TG 111081 Query 33480 TATC----CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535 || || | ||||| | ||||||||| | || || || || || || |||| Sbjct 111080 AGTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGG 111021 Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 | || | | ||| || || ||| || | || || || ||||| || | Sbjct 111020 CGCGGAACAAGTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGT 110961 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 |||||||||| || ||||| |||||||| ||||| || |||||||| || | || || | Sbjct 110960 ACATTTCCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAG 110901 Query 33656 TAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACTATTCCGTCACT 33713 | ||| ||||| | | || |||| || | || || ||||| || || ||||| Sbjct 110900 GCACCTGGACTTCGTTGCTGAA--GTTCATGGCAAGGTTCTCGTTCACAATACCATCACT 110843 Query 33714 GGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 ||| || || ||||| | || || || || || Sbjct 110842 GGCAGCGAAGAACGCGAGCACGTGCTTGATGAA 110810 >seq176 Length=73234 Score = 84.2 bits (92), Expect = 3e-11 Identities = 259/397 (65%), Gaps = 8/397 (2%) Strand=Plus/Minus Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| || |||| ||| ||| || ||||| || | ||| || ||||| | | ||| Sbjct 72763 CCATTCACCGTTCGCCTCCACACGCTTCATGAACAAATCTGGGATCCACAACCCGTAAAA 72704 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 || || | | | ||| ||| || || ||||| || | || | |||| | | Sbjct 72703 GAGGTCACGAGCACGATGGAGCTCATTACCGTGGTTCTTCTTCAAGTCCAAGAACTCGAA 72644 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCAT--AACTCCAGGCCGTTTGTTTCCT 63374 || || | ||||| || |||||||| ||||| | ||| | | || ||| ||| Sbjct 72643 GATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAACGAACCCTTG--CGCTTGCCTCCG 72586 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 ||||| || | ||| | ||| |||| || | || | ||||||||||| | ||| || Sbjct 72585 CCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACACGCAACATTGGAACGAGACCATTC 72526 Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT--TGATA 63492 || || || |||||| || || || | ||||||| || || || ||||| Sbjct 72525 GACGATCCGTTCGTACCGCGAATGTAACTGTTAGTGGCACGGATGTTGTGCATACTGATA 72466 Query 63493 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATAC 63552 || || || || ||| || ||||| ||||||| || | |||||| ||||||| Sbjct 72465 --CCGATGCCACCGGCCCACTTGGAGATAGATGCGCAGTTCTTGAGCGTGTCGTAGATAC 72408 Query 63553 CCTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63589 |||| ||| ||||| ||||| ||| | ||||| Sbjct 72407 CCTCAATGGAGTCATCCTTCATGGCAAGCAAGAAACA 72371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622941562327840