Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq598 343 4e-89 seq176 325 1e-83 seq43 113 1e-19 >seq598 Length=3624 Score = 343 bits (380), Expect = 4e-89 Identities = 637/927 (69%), Gaps = 11/927 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||| |||||||| ||| ||| ||||| || | | ||| ||| | || || Sbjct 2701 TTCACGCACGCGACGCCAACCTTGTTCAACGCTGGTACGCCTCGTCCTCAGCTATCGTCG 2760 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | || |||||||| || |||||||||||||||| |||||| || ||||| Sbjct 2761 TGCTTCTTGCTTGCTATGAAGGATGACTCCATCGAGGGTATCTATGACACGCTCAAGAAC 2820 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || ||| || |||||| || || || || ||||| || ||||| | ||||| Sbjct 2821 TGCGCTTGCATCTCCAAGTGGGCCGGTGGTATCGGTGTCAGCATGCACAACATCCGTGCC 2880 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||||||||||||||| || |||| |||||||| || ||||| ||| | ||| Sbjct 2881 ACTAACAGTTACATTCGCGGTACGAACGGATCGTCGAATGGTCTCGTTCCAATGTTGCGT 2940 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 ||||| || | || || | ||||| |||||||| ||||| |||||||| || |||| Sbjct 2941 GTGTTCAACGACACGGCTCGCTACGTTGACCAGGGCGGAGGCAAGCGCAAGGGTTCGTTC 3000 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || | ||||| || || || || || ||||| | || | ||| ||| Sbjct 3001 GCCATCTACTTGGAGCCATGGCACGCGGACATCTTCGAGTTCTTGGACTTGAAGAAGAAC 3060 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| ||||| |||||| | ||||| || | ||| | | || Sbjct 3061 CACGGTAATGAGCTCCACCGTGCTCGTGATTTATTCTACGCGTTGTGGATCCCAGATTTG 3120 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATGTC 364024 || |||||||| ||||| | | | | | ||| | || ||||| |||| | Sbjct 3121 TTCATGAAGCGTGTGGAATC--GAACGGCGACTGGAGTTTGTTCTGCCCGAACGAGGCCC 3178 Query 364025 CAGGTCT-TTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 | || || | | | || |||||||| || | | | | |||| ||||| ||| | Sbjct 3179 CTGGCCTCTACAGCTG-CTGGGGTGAAGAGTTCGAGACGTTGTACGCCAAGTACGAAGCT 3237 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 |||||||||||||| ||||| || | || ||| |||| ||||| || || | || ||| Sbjct 3238 GAGGGAAAGGCTCGCAAGACCATCCGTGCTCAGCAGCTCTGGTTCGCTATTCTCGAGTCG 3297 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 ||||| ||||| || || || || ||||||||||| || || |||||||||||| ||| Sbjct 3298 CAGATCGAGACGGGTACGCCTTACATGTTGTACAAGGACGCGGCCAACCGCAAGTCGAAC 3357 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||| |||| ||||| || | ||||||| | || ||| | || || ||||| Sbjct 3358 CAGCAGAACCTCGGTACGATCCGCTCGAGCAACTTGTGCTGTGAGGTGATCGAGTACACA 3417 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT---A 364320 | | | || ||| || ||||| ||||| |||||||| || ||||| ||| || Sbjct 3418 GATTCGGATGAGGTGGCTGTATGCAACCTCGCGTCGATTGCTCTTCCAAAGTTCGTGGGT 3477 Query 364321 AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT-ACTTGCAA 364379 | ||||| | | ||| |||| | | || | |||||| | ||| | || || Sbjct 3478 GAGGATGGCAAGTACGACTTCCAGAAGTTGTACCAGGTAACC-AAGATGGTGACGAAGAA 3536 Query 364380 TCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATAT 364439 || ||||||| ||||||| || || || ||||| || || ||| || ||| || Sbjct 3537 CCTGAACAAGGTCATCGACATCAACTACTACCCAATCCCAGAGGCCAAGAAGAGTAACAT 3596 Query 364440 GCGTCATCGCCCGATTGGTCTTGGTGT 364466 ||| || || || || ||||| ||||| Sbjct 3597 GCGCCACCGTCCTATCGGTCTCGGTGT 3623 >seq176 Length=73234 Score = 325 bits (360), Expect = 1e-83 Identities = 605/882 (69%), Gaps = 11/882 (1%) Strand=Plus/Plus Query 363592 CCACAGATGTCTTCTTGCTTTCTT-CTAAAAATGAAGGACGATTCCATCGAGGGTATCTT 363650 || ||| |||| || || |||||| || |||||||| || ||||| |||||||||| Sbjct 72356 CCTCAGTTGTCGTCGTG-TTTCTTGCTTGCCATGAAGGATGACTCCATTGAGGGTATCTA 72414 Query 363651 TGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGAT 363710 ||||| || ||||| || || ||| |||||| || || || || ||| | || Sbjct 72415 CGACACGCTCAAGAACTGCGCATCTATCTCCAAGTGGGCCGGTGGCATCGGTATCAGTAT 72474 Query 363711 CCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCT 363770 ||||| | ||||| ||||||||||||||||| || |||| |||||||| || Sbjct 72475 GCACAACATCCGTGCCACTAACAGTTACATTCGCGGTACGAACGGATCGTCGAATGGTCT 72534 Query 363771 GGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAA 363830 ||||| ||| | |||||||| || | || || | ||||| |||||||| ||||| || Sbjct 72535 CGTTCCAATGTTGCGTGTGTTCAACGACACGGCTCGCTACGTTGACCAGGGCGGAGGCAA 72594 Query 363831 GCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCT 363890 |||||| || |||| || || || | ||||| || || || || || ||||| | Sbjct 72595 GCGCAAGGGTTCGTTCGCCATCTACTTGGAGCCATGGCACGCGGACATCTTCGAGTTCTT 72654 Query 363891 TGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACT 363950 || | ||| ||| || || ||| ||||| ||||| || || || | | Sbjct 72655 GGACTTGAAGAAGAACCACGGTAATGAGCTCCATCGTGCTCGTGACCTCTTTTACGGGTT 72714 Query 363951 TTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCA---GGTAAGAATTGGTCACTCTT 364007 ||| | | || || |||||||| |||||||| ||| |||| || | || Sbjct 72715 GTGGATCCCAGATTTGTTCATGAAGCGTGTGGAGGCGAACGGT--GAAT-GGAGTTTGTT 72771 Query 364008 TTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATA 364067 |||||| ||||| || |||||| | ||| ||||| || || | | | | || Sbjct 72772 CTGCCCAAACGAAGCTCAAGGTCTCTACGAGTGCTGGGGCGAGGAGTTCGAGACGTTGTA 72831 Query 364068 CGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTT 364127 || ||||||||| | |||||||||||||| ||||| || | || ||| |||| ||||| Sbjct 72832 CGCCAAGTATGAAGCTGAGGGAAAGGCTCGCAAGACCATCCGTGCTCAGCAGCTCTGGTT 72891 Query 364128 TGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTG 364187 |||||| | || || ||||| ||||| || || || |||||| ||||||| ||| || Sbjct 72892 CGCCATCCTCGAGTCACAGATCGAGACGGGTACGCCGTATATGCTGTACAAGGATGCGGC 72951 Query 364188 CAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGA 364247 || |||||||| ||||||||| |||| ||||| || | ||||||| | || || Sbjct 72952 GAATCGCAAGTCGAACCAGCAGAACCTCGGTACGATCCGCTCGAGCAACTTGTGCTGTGA 73011 Query 364248 GATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 | | || || ||||| | | | || ||| || || || ||||||||||||||||| || Sbjct 73012 GGTGATCGAGTACACAGATTCGGATGAGGTCGCTGTGTGCAACCTTGCGTCGATCGCCCT 73071 Query 364308 TCCGGCGTTTGT---AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTA 364364 ||| ||| || | || || | | ||| | || | || || | ||| || | Sbjct 73072 ACCGAAGTTCGTGGGTGAGGACGGCAAGTATGATTTCGAGAAGCTCTACAAGGTAGCCAA 73131 Query 364365 TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC 364424 || | || || || ||||||| ||||||| || || || ||||| || || || Sbjct 73132 ACAAGTGACGAAGAACCTGAACAAGGTCATCGACATCAACTACTACCCAATCCCAGAGGC 73191 Query 364425 CGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGT 364466 | || ||| ||||| || || || || ||||| ||||| Sbjct 73192 CAAGAAGAGTAACATGCGCCACCGTCCTATCGGTCTCGGTGT 73233 >seq43 Length=178053 Score = 113 bits (124), Expect = 1e-19 Identities = 349/530 (66%), Gaps = 10/530 (2%) Strand=Plus/Plus Query 111426 ATTTGGGATGGAAATGGATCACGTGACTTTCTAG-ATTCAGTTGGTCTTGTCGACAACGA 111484 |||||||| || |||||||| || | |||| | || | ||||| | | ||| Sbjct 80797 ATTTGGGACGGCAATGGATCGAAGGAATACCTAGGAAGCA-TCGGTCTCGGTCATCGCGA 80855 Query 111485 AGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAA 111544 || ||| |||||||| ||||| || || || || ||||| ||||||||||| | || | Sbjct 80856 AGCAGGCGATCTCGGTCCAGTGTATGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTATAC 80915 Query 111545 AACCATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCA 111604 ||||||| | || ||||| ||||| | | ||||| | | Sbjct 80916 CGATATGCACGCCGATTACACCGGTCAGGGTGTGGATCAGCTCGCTGAGGTCATCCACAA 80975 Query 111605 AATTAAGAACAACCC-AACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT 111663 |||||| |||||| ||| | || || ||| | || ||||||||| ||| | Sbjct 80976 GCTTAAGACCAACCCGAACGAC-CGGCGTATTCTCTTGTCTGCATGGAATCCAGCAGACC 81034 Query 111664 TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGA 111723 | | | ||||| || || || || || | | |||||||| || || | ||| || Sbjct 81035 TCAAGGAGATGGCGCTCCCTCCGTGCCACATGTTCTGCCAGTTCTACGT-CGCGAATGGC 81093 Query 111724 T-GCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAAT 111782 ||| || ||||||||||| |||||||| ||||| || || || ||||| ||||||||| Sbjct 81094 GAGCTCTCGTGCCAAATGTACCAGCGATCGGCTGACATGGGCCTCGGTGTGCCGTTTAAT 81153 Query 111783 ATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGT 111842 || || |||||||| | | || | || |||||||| | | ||||| | ||| Sbjct 81154 ATCGCCAGTTACGCGTTGTTGACCCGATTGATCGCTCAGGTCGCTGGGCTCAAGGCCGGT 81213 Query 111843 GAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAA 111902 || ||| | || || || || ||||| || | ||| || ||| | || | || || Sbjct 81214 GACTTCGTCCATGTCATTGGTGATGCACACATCTACTTGAATCACCTCGAGCCGCTCAAG 81273 Query 111903 ACACAGTTGAAGCGCAAAC--CATACGATTTCCCAACGATTCATATCAAT 111950 | |||||| |||| | | | || ||||| ||| ||| |||||| Sbjct 81274 ATCCAGTTGGGACGCACTCCTCGTCCG--TTCCCGACGCTTCGCATCAAT 81321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303341509766168