Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq56 140 3e-28 seq52 116 3e-21 seq598 109 5e-19 seq125 96.9 3e-15 >seq56 Length=164687 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | |||||||||||| || |||||||| || Sbjct 65752 CCACCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 65693 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 65692 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGA 65633 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| |||||||||| | || | | || | | ||||| Sbjct 65632 ATTCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACA 65573 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || ||||| || || || |||||||| Sbjct 65572 TCGAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCAT 65526 >seq52 Length=165522 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| || ||||| || || | || |||||||| || |||||||| || Sbjct 29023 CCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAG 28964 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| || |||| || |||||||| || ||||| Sbjct 28963 AGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGATCTGGAGGA 28904 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| |||||||| | | || | | || | | ||||| | Sbjct 28903 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATCGAGTCCGAAGGCTCGACG 28844 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || ||||| || | || || ||||| |||||||| Sbjct 28843 TCAAGCGTGATCGTCTTACCCGTCAACGTCTTCACGAAGATCTGCAT 28797 >seq598 Length=3624 Score = 109 bits (120), Expect = 5e-19 Identities = 496/772 (64%), Gaps = 31/772 (4%) Strand=Plus/Minus Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCG 145684 || |||||||| | || || || ||| ||| || | || |||| | | | ||| Sbjct 3458 GCAATCGACGCGAGGTTGCATACAGCCACCTCATCCGAATCTGTGTACTCGATCACCTCA 3399 Query 145685 GCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCAC 145744 |||||| ||||| | ||| || || || || ||||| || || | |||| | Sbjct 3398 CAGCACAAGTTGCTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCC 3339 Query 145745 GCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA---AAA 145801 ||||||||||| | |||||| || || ||||| | ||||| ||| | ||| || Sbjct 3338 GCGTCCTTGTACAACATGTAAGGCGTACCCGTCTCGATCTGCGACTCGAGAATAGCGAAC 3279 Query 145802 CGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGC--GGCCCTCTTCTTCGTATTTCC 145859 | | || | ||| ||||| | || | || ||| ||||| ||||||| || Sbjct 3278 CAGAGC---TGCTGAGCACGGA--TGGTCTTGCGAGCCTTTCCCTCAGCTTCGTACTTGG 3224 Query 145860 TGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGAC 145919 ||| | | ||| ||| | ||| |||| | | ||||| || || ||| || | Sbjct 3223 CGTACAACGTCTCGAACTCTTCACCCCAGCAGCTGTAGAGGCCAGGGGCCTCGTTCGGGC 3164 Query 145920 ACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACA 145979 | | || ||| ||||||| | | || |||| ||| ||||||||||| | ||||| Sbjct 3163 AGAACAAACTCCAGTCGCCGTTCGATTCCACACGCTTCATGAACAAATCTGGGATCCACA 3104 Query 145980 GCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAAT-TA 146038 |||||| | || || || || | |||| ||| ||| |||||| | | Sbjct 3103 ACGCGTAGAATAAATCACGAGCACGGTGGAGCTCATTACCGTGGTTCTTCTTCAAGTCCA 3044 Query 146039 AGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGT 146098 || || | | |||||||||||||||| || || | |||| ||||| | || || || Sbjct 3043 AGAACTCGA-AGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAACGAACCCTTGCGC 2985 Query 146099 TTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCG 146155 ||| || |||||||| |||| || || ||| ||| || || |||| ||| || || Sbjct 2984 TTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACACGCAACATTGGAACG 2925 Query 146156 ACGCCGCTGGCTACG--CCGTTCGTA----GAGTTTATTCTGGTGCCGCGGGAGCGCACG 146209 | || | | ||| ||||||||| || | || ||| | | || | || | | Sbjct 2924 AGACCATT--CGACGATCCGTTCGTACCGCGAATGTA-ACTGTT--AGTGGCA-CGGATG 2871 Query 146210 CAATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGC 146269 || | | || |||| ||| ||| | ||||||| || ||||||| |||| Sbjct 2870 TTGTGCATGCTGACACCGATACCACCGGCCCACTTGGAGATGCAAGCGCAGTTCTTGAGC 2811 Query 146270 GTCTCGTAGATGCCGTCAATGCTATC--GCTTCGAATGCCGAGCAGAAAGCACGAGCACA 146327 || || ||||| || || ||| || |||| || | |||| |||||||| | | Sbjct 2810 GTGTCATAGATACCCTCGATGGAGTCATCCTTC--ATAGCAAGCAAGAAGCACGACGATA 2753 Query 146328 TCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAA 146379 ||| | ||||| || || |||||| || || |||||||||| || Sbjct 2752 GCTGAGGACGAGGCGTACCAGCGTTGAACAAGGTTGGCGTCGCGTGCGTGAA 2701 >seq125 Length=98586 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| || || | |||||||||||| || |||||||| || | Sbjct 38525 CCACCACGAAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 38584 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| | ||||||||| || ||||| Sbjct 38585 AAGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 38644 Query 131128 ATTCCT 131133 |||||| Sbjct 38645 ATTCCT 38650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472008528284160