Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq715 150 4e-31 seq4 145 2e-29 seq141 132 1e-25 seq265 102 2e-16 seq671 87.8 4e-12 >seq715 Length=275277 Score = 150 bits (166), Expect = 4e-31 Identities = 359/536 (67%), Gaps = 10/536 (2%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||| ||||| ||||| |||||||| | |||||| || | | ||||||||||| | || Sbjct 111241 GTGGAGACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACC 111182 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 ||| ||| |||||||||||| | ||| || || || ||||| | | |||||| | Sbjct 111181 ACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCCTCAATGGC 111122 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCTGCGACA-AGAACTTCTGTGC-- 252020 | | || || | ||||||||||||| || || || | | | | | || Sbjct 111121 AGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACACCAGCGGAGCGC 111062 Query 252021 CCATGCTGCCTTCTT-TCCAACCGCG-GGGATTGTTTCGATTGCATCAAAGAGAGAGTTC 252078 ||| |||||||| | || ||| |||||||| || || || || | |||| Sbjct 111061 CCAGTTGGCCTTCTTCTGCA--CGCATGGGATTGTCTCAATGGCGCGGAACAAGTGGTTC 111004 Query 252079 CGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 |||||| | |||| |||| || |||| || || |||||||| ||||| |||||| Sbjct 111003 TTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGTACATTTCCGAGTGGATG 110944 Query 252139 GATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTG 252198 || || |||||| | | ||||| || || ||| | |||||| || Sbjct 110943 TTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAGGCACCTGGACTTCGTTG 110884 Query 252199 GAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGA 252258 ||||| | |||| |||||| |||| || ||||| ||| | || ||||| | || Sbjct 110883 CTGAAGTTCATGGCAAGGTTCTCGTTCACAATACCATCACTGGCAGCGAAGAACGCGAGC 110824 Query 252259 ATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCC 252318 | | |||||||||||||||||||| |||| | | ||| | |||||| | ||| Sbjct 110823 ACGTGCTTGATGAAGTGACGCTCATTGTCGGT---CATGTTGCCCCAGTCCTTGAGGTCG 110767 Query 252319 TGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 || ||| | || || ||||||||||| ||| |||||||||||||||| Sbjct 110766 TGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCGCCTTCTTGTACAT 110711 >seq4 Length=313877 Score = 145 bits (160), Expect = 2e-29 Identities = 659/1024 (64%), Gaps = 43/1024 (4%) Strand=Plus/Plus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 ||||| ||| ||||||| ||||||||||| || ||||| | ||| |||| ||| | Sbjct 171324 GATCTCTGTAACTGTGAGTTCTCGCTCGCTTACGGTGGTATGATCTTGCTCAACAACGCT 171383 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 || || |||||||||| |||| || |||||| ||||| || || |||||| Sbjct 171384 CGTCTTCGTCTCAAGCGTGGTCACCGTTACGGTCTCTGTGGTCCAAACGGTTGTGGTAAG 171443 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATC-TGA 279529 || || ||||| ||||| | || |||||||| || || || || || ||| ||| Sbjct 171444 TCGACGCTCATGCGTGCCATCTCGAAGGGTCAGCTCGAGGGCTTCCCAAA-GCAGGATGA 171502 Query 279530 GGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTT 279589 | | | ||| |||| || |||||| || || | || | ||| |||| | Sbjct 171503 GCTCAAGACCGTGTTCGTTGAGCACAACCTCCAGGCCGAGGAAGCCGATCTTCCTGTCCT 171562 Query 279590 CGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCC--TGAGGAAATCATC 279647 ||||||| | | ||| | | | | || || |||| | ||| ||| || Sbjct 171563 CGACTTCATGTTCTGTGA---TGACGCCCTC-AAGTC-GCTCCCACGTGAAGAAGTCCGT 171617 Query 279648 CAGAAACTGGAGGCCAATGGTTTTGATGAAAGAATGCGTAATCTGCCAGTAGGTTCTCTG 279707 ||| || | | ||||| || |||| ||| ||||| ||| |||| Sbjct 171618 GAGATGCTCTCGAGCGTCGGTTTCACCGACGAGATGCAGGCTCTTCCAGTCGGTGCTCTT 171677 Query 279708 TCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTC 279767 ||||||||||||||||||||||| | | |||| ||||| | || || ||| || Sbjct 171678 TCGGGTGGTTGGAAGATGAAGCTCGAATTGGCTCGTGCCATGTTGATGAAGGCTGATATC 171737 Query 279768 CTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCC 279827 | |||| ||||| || || |||||| |||| || ||||| |||||| | | | | Sbjct 171738 TTGTTGCTCGATGAACCTACGAACCACTTGGATGTCAAGAACGTCGCCTGGTTGGAGAAC 171797 Query 279828 TACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTA 279887 ||| | | ||| || | || || | || |||| || || |||||||| || ||| | Sbjct 171798 TACTTGAACAGCCTCACCAACGTGACCTCGATCATGGTGTCGCACGACTCGGGTTTCTTG 171857 Query 279888 GATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCAC 279944 || |||||| | |||||| ||||| ||| | || || ||| ||| |||| Sbjct 171858 GACAACGTGTGTACCAACATCATCCACTACGAGAACCGTAAGCTCAAGATCTACAAG--- 171914 Query 279945 ATCGGCAACCTGTCTGCTTTCGT---GGCAAAGCGCCCTGAGGCGGCCGCCTACTATGAC 280001 || ||||| || ||||| || ||| || ||||| ||||||| || Sbjct 171915 ---GGTAACCTCTCGAAGTTCGTCGAGGTCAAG---CCAGAGGCCAAGACCTACTACGAG 171968 Query 280002 CTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-AC 280060 || ||| || | ||||| ||||||||||| || || ||| | ||| | Sbjct 171969 TTGGAGGCTGCTGCTTTCAAGTTCACCTTCCCTGAGCCTGGTTTCTTGGCTGATATCAAG 172028 Query 280061 ATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCG---TCTCCTTTGC-TTATCCCAATG 280116 | ||| || || | ||||| | | || || | | | | | || || | Sbjct 172029 AACAAGGGTAAGC-CGATCAT-TCGTT---TGACGAACTGTTCGTACCAGTACCCAGGTC 172083 Query 280117 GCCCCAA--CATC-TTCAGCAGTGTCAACTCG--CAGGT-TTCTATGAACTCACGGATTG 280170 | ||| |||| ||||| || | |||| || | ||| | ||| || |||| Sbjct 172084 GTGACAAGCCATCGATCAGCGGT---ATCTCGGTCACCTGTTCGCTTGCCTCCCGTATTG 172140 Query 280171 GTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGA 280230 || | || || || ||||| |||||||| ||| | ||||| | ||||||| || Sbjct 172141 CCGTTCTCGGTCCAAACGGTGCTGGTAAGTCGACCATGATCAAGATGTTGACTGGTGAAG 172200 Query 280231 CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTC 280290 | || | || ||| | || |||||||| || | | || | ||||||||||| | Sbjct 172201 TCGAGCCAACGTCGGGTACTGTGTGGAAGCACCCTGCCCTTCGTTTCGCTTACGTCGCCC 172260 Query 280291 AGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGT 280350 ||||||||||||||||||| || | ||| ||||||| | | ||||| ||||| |||| Sbjct 172261 AGCACGCTTTCCACCACATTGAAGAGCACTTGGACATCTCGGCCAACCAGTACATCCAGT 172320 Query 280351 GGCG 280354 |||| Sbjct 172321 GGCG 172324 >seq141 Length=89168 Score = 132 bits (146), Expect = 1e-25 Identities = 216/306 (71%), Gaps = 4/306 (1%) Strand=Plus/Plus Query 218528 ACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGG 218587 ||||||| |||||||| ||||| | || ||| || || || ||||| || | Sbjct 24249 ACAAGGAACTCATTCTATTCTCTAGAGCAGACAACTTGCGATCGATCCCAAGCGTTGTCG 24308 Query 218588 ATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTT-TGCCGCATTCAAGCGGAACCTGGTT 218646 |||| | |||||||| || |||||| | ||||| || | | ||| || |||||| Sbjct 24309 ATGGTTTTAAGCCATCTCAACGTAAGGTGCTCTTCTGTTGTCT-CAAACGAAACCTGAAG 24367 Query 218647 CAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCAC 218706 ||||| |||||||| || || || || || || || ||| | ||||||||| Sbjct 24368 ACGGAAATCAAGGTCGCCCAACTTGGAGGATACGTCTCGGAGCATTCGGCTTACCATCAC 24427 Query 218707 GGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAAC 218766 |||||| ||| | | ||| | ||||| |||||| || |||| |||||||| ||| Sbjct 24428 GGTGAGGCAAGTATATACGGTACAATTGTCAACATGGCGCAAGACTTCGTGGGCAGCAAC 24487 Query 218767 AACATGAACTTGCTGCTC-CCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGA 218825 ||||| || ||||| ||| || ||||||||||| ||| | || | |||| || ||||| Sbjct 24488 AACATCAATTTGCT-CTCGCCAAACGGTCAGTTCGGTACGCGATTGATGGGAGGCAAGGA 24546 Query 218826 TAGTGC 218831 ||||| Sbjct 24547 CAGTGC 24552 >seq265 Length=38059 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 36999 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 37058 Query 142563 CCCCAC 142568 |||||| Sbjct 37059 CCCCAC 37064 >seq671 Length=2351 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||||||||||||||| | || |||| | |||||||||||||||||| Sbjct 882 AGCCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAG 823 Query 142563 CCCCAC 142568 |||||| Sbjct 822 CCCCAC 817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027827265528884