Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq715 302 8e-77 seq598 145 1e-29 >seq715 Length=275277 Score = 302 bits (334), Expect = 8e-77 Identities = 588/855 (69%), Gaps = 15/855 (2%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || | |||| |||||| ||||||||||||||| | | | |||||| | Sbjct 110686 GATCCAGGAGAAGGAGATCTGGGATATGTACAAGAAGGCGGAAGCCAGCTTCTGGACGGT 110745 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCAC-TGTCTGAGAACGAAA 42402 ||||||||| || || | | ||| | ||||| | || || | || || || Sbjct 110746 CGAGGAGATCGATCTTGTGCACGACCTCAAGGACTGGG-GCAACATGACCGACAATGAGC 110804 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 ||| |||| || | || || |||||||| ||| ||| || || || || |||| Sbjct 110805 GTCACTTCATCAAGCACGTGCTCGCGTTCTTCGCTGCCAGTGATGGTATTGTGAACGAGA 110864 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 |||| |||| | |||| || || || ||| ||| || |||||||||||||||| Sbjct 110865 ACCTTGCCATGAACTTCAGCAACGAAGTCCAGGTGCCTGAAGCCCGCTGCTTCTACGGCT 110924 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 ||||||| ||||| |||||| | ||||| || ||||| | || | ||||||||| Sbjct 110925 TCCAGATTGCCATTGAGAACATCCACTCGGAAATGTACTCGCTGTTGATTGACACGTACA 110984 Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642 || |||| ||| |||| ||| ||||| ||||| ||||| || || ||| | Sbjct 110985 TCAAGGATGCCGCCGAGAAGAACCACTTGTTCCGCGCCATTGAGACAATCCCATGCGTGC 111044 Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTC--CCGACGCAACGTTCGGCGA 42700 |||||||||| ||||||||||| |||| | || || |||| |||| | || Sbjct 111045 AGAAGAAGGCCAACTGGGCGCTCCGCTGG--TGTGACTCAGAGAACGCCGCGTTTGCTGA 111102 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 | | | || ||||| | ||| | ||||| |||||||||||||| | ||| ||| | Sbjct 111103 GCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTCGTTCTGCTCGGT 111162 Query 42761 CTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 ||||||||||||| || ||| || ||||| || |||| |||||||||||| || |||| Sbjct 111163 CTTCTGGCTCAAGAAGCGTGGTCTC-ATGCCTGGCCTCAGCTTCTCGAACGAGCTTATCA 111221 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC 42879 | | ||||| || || || | ||||| ||||| | || ||| | | | || Sbjct 111222 GTCGTGACGAAGGTCTCCACTGTGACTTCGCCTG---CTTGCTCTACAACAAGCTTGTCA 111278 Query 42880 ACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 || | | | || ||| ||| | || ||| || ||||| ||||||||||| Sbjct 111279 ACCGTCTCCCAGAGTCGCGAATCCACGAGATTGTCAGTGATGCCGTCACGATCGAGAAGG 111338 Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 ||||| ||| | | ||||| || || || |||| |||||| | ||||||||| Sbjct 111339 AGTTCGTCAAGGACTCGCTCCCAGTCGAGCTTATCGGTATGAACTCGGCGCTCATGTGCC 111398 Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCTGTGC-CAGATGG-GTCTCAGCCGCCTCTA 43057 |||||||| ||| |||||| || | ||| || | | ||| ||||| | | |||| Sbjct 111399 AGTACATCGAGTTCGTCGCTGATCGTCTTCTCCACGCTCTTGGTGTCTC-GAAG-ATCTA 111456 Query 43058 CAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTT 43117 |||| || | ||| || |||| ||||| | |||||| | |||||||||||||||| Sbjct 111457 CAACGCGTCTAACCCATTTGACTGGATGGATATGATCTCGCTCCAGGGCAAGACCAACTT 111516 Query 43118 TTTCGAGAAGCGCGT 43132 ||||||||||| || Sbjct 111517 CTTCGAGAAGCGTGT 111531 >seq598 Length=3624 Score = 145 bits (160), Expect = 1e-29 Identities = 495/763 (65%), Gaps = 20/763 (3%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 || |||||||| || |||||||| ||||| | ||||||| || | ||| ||| | | Sbjct 3449 GCGAGGTTGCATACAGCCACCTCATCCGAATCTGTGTACTCGATCACCTCACAGCACAAG 3390 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || | ||| || || |||| ||| || || |||||| |||| ||||||||| Sbjct 3389 TTGCTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTG 3330 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || | |||| | ||| || ||||||| ||| | |||| | | |||||| | | Sbjct 3329 TACAACATGTAAGGCGTACCCGTCTCGATCTGCGACTCGAGAATAGCGAACCAGAGCTGC 3270 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 ||| || ||| |||||||||| ||||| || ||||| || ||||| | |||| Sbjct 3269 TGAGCACGGATGGTCTTGCGAGCCTTTCCCTCAGCTTCGTACTTGGCGTACAACGTCTCG 3210 Query 244928 AACTCGGGGCCCCAG-ACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCA 244986 ||||| |||||| | || || ||||| ||| | |||||| | | |||||| Sbjct 3209 AACTCTTCACCCCAGCAGCT-GTAGAGGCCAGGGGCCTCGTTCGGGCAGAACAAACTCCA 3151 Query 244987 CTCGCCG-CCG--TCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 |||||| || ||| || | || |||||| | || |||||||| | || | ||| Sbjct 3150 GTCGCCGTTCGATTCC---ACACGCTTCATGAACAAATCTGGGATCCACAACGCGTAGAA 3094 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 | || | | | || || || ||||||| ||| ||||| || || || Sbjct 3093 TAAATCACGAGCACGGTGGAGCTCATTACCGTGGTTCTTCTTCAAGTCCAAGAACTCGAA 3034 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 || ||| ||||||| ||||||| ||||| |||| | || |||||| || || Sbjct 3033 GATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAACGAACCCTTGCGCTTGCCTCCGCC 2974 Query 245164 CTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 ||||| || | | ||||| ||||||| | |||| | || || | || | Sbjct 2973 CTGGT----CAACGTAGCGAGCCGTGTCGTTGAACACACGCAACATTGGAACGAGACCAT 2918 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATG--GA 245277 | || ||||| || || ||||| | || | | || |||| ||| || Sbjct 2917 TCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGTGGCACGGATGTTGTGCATGCTGA 2858 Query 245278 CATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTAT 245337 || || | || ||||| |||||||||| |||||| |||||| ||||| || Sbjct 2857 CA--CCGATACCACCGGCCCACTTGGAGATGCAAGCGCAGTTCTTGAGCGTGTCATAGAT 2800 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGG 245397 ||||| ||| ||| |||||| |||| ||||| || || ||||| || || Sbjct 2799 ACCCTCGATGGAGTCATCCTTCATAGCAAGCAAGAAGCACGACGATAGCTGAGGACGAGG 2740 Query 245398 GCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAG 245440 | | | |||||||| || || | ||||| || ||| || Sbjct 2739 CGTACCAGCGTTGAACAAGGTTGGCGTCGCGTGCGTGAAGAAG 2697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944330653730240