Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq56 125 2e-23 seq52 109 1e-18 >seq56 Length=164687 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||||||||| ||||| || | || || || |||||| Sbjct 65716 TCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 65657 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || ||| |||||||| || |||||||| ||| || ||||| Sbjct 65656 ATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTG 65597 Query 288403 TCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || |||| || || ||||||||||| ||||| || ||||||||||| Sbjct 65596 TCAATGCTGTC---CGATGGCTCGACATCGAGCGTGATGGTCTTGCCCGTCAGAGTCTTC 65540 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 65539 ACAAAGATCTGCAT 65526 >seq52 Length=165522 Score = 109 bits (120), Expect = 1e-18 Identities = 145/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| ||||| ||||| || | || || || || ||| Sbjct 28987 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCAAAG 28928 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| ||| ||||| || || || || |||||||| ||| |||||| Sbjct 28927 ATCAATCGCTGCTGA---TCTGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACG 28871 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || || || | || || || |||||||||||||| || |||| ||||| Sbjct 28870 TTGTCAATCGAGTCCGAAGGCTCGACGTCAAGCGTGATCGTCTTACCCGTCAACGTCTTC 28811 Query 288460 ACGAATATCTGCATTATGTT 288479 ||||| |||||||| |||| Sbjct 28810 ACGAAGATCTGCATCTTGTT 28791 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| || || ||||| || | || || || || ||| Sbjct 10637 TCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAG 10696 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| ||| ||||| || ||||| || |||||||| ||| || || Sbjct 10697 ATCAATCGCTGCTGA---TCTGGAGGAATGCCTTCCTTGTCCTGGATCTTCTGCTTGACA 10753 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || || || | || || || | ||| || ||||| || || || |||||| Sbjct 10754 TTGTCAATCGAGTCCGAAGGCTCGACGTCCAACGTAATGGTCTTGCCCGTGAGTGTCTTG 10813 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 10814 ACGAAGATCTGCAT 10827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179643457230872