Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq715 122 2e-22 seq4 89.7 1e-12 seq2 87.8 4e-12 >seq715 Length=275277 Score = 122 bits (134), Expect = 2e-22 Identities = 562/880 (64%), Gaps = 40/880 (5%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| |||||| | ||| || ||||||||||| |||||||| | || | ||| ||| Sbjct 110681 TTCCCGATCCAGGAGAAGGAGATCTGGGATATGTACAAGAAGGCGGAAGCCAGCTTCTGG 110740 Query 242935 ACCACCGAGGAAGT---TCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAAT 242991 || |||||| | || | || ||| || || |||||| || | | | | Sbjct 110741 ACGGTCGAGGAGATCGATCTTGTGCACG---ACCTCAAGGACTGGGGCAACA---TGACC 110794 Query 242992 GACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATT 243051 ||| | || ||||| |||||||| ||| | || | || ||||| | | ||||||||| Sbjct 110795 GACAATGAGCGTCACTTCATCAAGCACGTGCTCGCGTTCTTCGCTGCCAGTGATGGTATT 110854 Query 243052 GTGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAA 243111 |||| || || || | ||||| || ||||| ||| || || || || Sbjct 110855 GTGAACGAGAACCTTGCCATGAACTTCAGCAACGAAGTCCAGGTGCCTGAAGCCCGCTGC 110914 Query 243112 TTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCT 243167 || || | | ||| | |||| | ||| ||||| || ||| || | || | Sbjct 110915 TTCTACGGCTTCCAGATTGCCATTGA--GAAC--ATCCACTCGGAAATGTACTCGCTGTT 110970 Query 243168 TATCGACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAA 243225 || ||| || || ||| |||| ||| ||| | | ||| |||||| || Sbjct 110971 GATTGACACG--TACATCAAGGATGCCGCCGAGAAGAACCACTTGTTCCGCGCCATTGAG 111028 Query 243226 AACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCA-----GAAGTGGCT---AGAAC 243277 | || || || || || ||||| || ||||| | | ||| || ||||| Sbjct 111029 ACAATCCCATGCGTGCAGAAGAAGGCCAACTGGGCGCTCCGCTGGTGTGACTCAGAGAAC 111088 Query 243278 CCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTT 243337 | | | |||||||||||| ||||||||| | | |||| ||||| | || | Sbjct 111089 GCCG-----CGTTTGCTGAGCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCT 111143 Query 243338 CCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTC 243397 | || |||||| | |||| ||||| ||| ||| | |||||||||||| | Sbjct 111144 CGGGTTCGTTCTGCTCGGTCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCT 111203 Query 243398 TGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA-TG 243456 | || |||||| | |||||||| ||||| || || ||| | |||| |||| | Sbjct 111204 TCTCGAACGAGCTTATCAGTCGTGACGAAGGTCTCCACTGTGACTTCGCCT-GCTTGCTC 111262 Query 243457 TATTCAAAGCTCCAGAACAAGCTACCAT--TCGAAACGGTCAAACAAATCATCACAGAAG 243514 || ||||| ||| || ||| ||| | || | | || ||| || | Sbjct 111263 TACAACAAGCTTGTCAACCGTCTCCCAGAGTCGCGAA--TCCACGAGATTGTCAGTGATG 111320 Query 243515 CAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGA 243574 | || | ||| ||||| ||| | ||| | | ||| | |||||| || |||| Sbjct 111321 CCGTCACGATCGAGAAGGAGTTCGTCAAGGACTCGCTCCCAGTCGAGCTTATCGGTATGA 111380 Query 243575 ACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTG 243634 |||| | |||||| | ||||||||||| ||||| || || || || || ||| |||| Sbjct 111381 ACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTCCACGCTCTTG 111440 Query 243635 GTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTC 243694 || ||| | |||||| | ||||| |||| || ||||| | || ||||| | Sbjct 111441 GTGTCTCGAAGATCTACAACGCGTCTAACCCATTTGACTGGATGGATATGATCTCGCTCC 111500 Query 243695 AAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTA 243734 | || || || ||||||||||| |||||||| |||| || Sbjct 111501 AGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGAATA 111540 >seq4 Length=313877 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 333315 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 333374 || ||||| |||||||| ||||||| ||||| |||||||||| | ||||| | Sbjct 172348 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGAGATGTCCAAG 172289 Query 333375 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 333434 || || || |||||||||||||| ||||| || |||||||| | ||| | || ||| Sbjct 172288 TGCTCTTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAAGCGAAACGAAGGGCAGGGTGC 172229 Query 333435 TTCCAAACA 333443 ||||| ||| Sbjct 172228 TTCCACACA 172220 >seq2 Length=488588 Score = 87.8 bits (96), Expect = 4e-12 Identities = 224/338 (66%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 ||||| || || || | |||||| ||||||||||||||| | || || |||||| || Sbjct 274897 GTGAAGATGTAACGAGGACTCGCAGCATCCTTACCACCCTGAAGTCGCGTACCGAATTGA 274956 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 ||| || | | | | | ||| || || || || ||||| || | ||||| Sbjct 274957 CCCGAAGGGTAGAGCAATGGCAAGTTGTTCGCACCAACGTAGTCCTGCGCCATATTCACA 275016 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616 || || || || |||||||| || ||||| || || ||||||| | |||||| Sbjct 275017 ATTGTTGAGTGAAGTGATGCTTCACCGTGGTGGTATGCCGTATGCTCACTACAGTAACCC 275076 Query 297617 CTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGA---AAGCTGAATATATC 297673 || ||| || ||||| || || |||| | || ||||||| |||| || | | | Sbjct 275077 GCGAGCTGCGCCACCTTGACTTCCTTCGTGAGTTTTCGCTTGAGACAAGC-GA--ACAAC 275133 Query 297674 ACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCG 297733 || || || || || |||| |||||||| || || |||| ||| | ||| Sbjct 275134 ACCTTACGCTGTGATACCTTGAGACCATCAATAACGGATGGAAGCGATCGAGCATTGTCG 275193 Query 297734 TACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTC 297771 |||||||| || || ||||||| || |||||| Sbjct 275194 GCATGCGAGAACTGGATCAGCTCCTTGTTGACGAAGTC 275231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102869769409400