Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq598 260 2e-64 seq176 233 2e-56 seq715 208 9e-49 seq141 96.9 4e-15 >seq598 Length=3624 Score = 260 bits (288), Expect = 2e-64 Identities = 627/938 (67%), Gaps = 23/938 (2%) Strand=Plus/Minus Query 114459 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 114518 |||| ||||| || || ||||| || || || |||| ||||||| ||| ||||||| Sbjct 3469 ACTTTGGAAGAGCAATCGACGCGAGGTTGCATACAGCCACCTCATCCGAATCTGTGTACT 3410 Query 114519 CTATAATTTCCGTACACAAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTG 114575 | || | || ||||| || ||| || || || | ||||| || || | Sbjct 3409 CGATCACCTCACAGCACAAGTTG---CTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCG 3353 Query 114576 ACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACT 114635 |||| ||| ||| |||||||| | |||||| ||||| |||||||| | || |||| Sbjct 3352 ACTTGCGGTTGGCCGCGTCCTTGTACAACATGTAAGGCGTACCCGTCTCGATCTGCGACT 3293 Query 114636 TGAGAATAGCCTTCCAGACATCGGCGGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTC 114690 ||||||||| ||||| || |||| |||| | ||| ||| || ||||| Sbjct 3292 CGAGAATAGCGAACCAGA-----GCTGCTGAGCACGGATGGTCTTGCGAGCCTTTCCCTC 3238 Query 114691 CTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTG-AGAGCCCTG 114749 | |||||||| | ||| | | || |||||||||||| | || ||| |||| || | Sbjct 3237 AGCTTCGTACTTGGCGTACAACGTCTCGAACTCTTCACCC-CAGCAGCTGTAGAGGCCAG 3179 Query 114750 GTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGA 114809 | |||| | |||||||| | | ||| | || | || |||||||||||||| | Sbjct 3178 GGGCCTCGTTCGGGCAGAACAAACTCCAGTCGCCGTTCGATTCCACACGCTTCATGAACA 3119 Query 114810 GGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTGA 114868 ||||||||||| | || |||| | ||| ||| || | | || ||| || || Sbjct 3118 AATCTGGGATCCACAACGCGTAGAATAAATCACGAGCACGGTGGAGCT-CATTACCGTGG 3060 Query 114869 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 114928 || ||| ||||| || || | ||| ||||||||||| || |||| ||| | ||| Sbjct 3059 TTCTTCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCG 3000 Query 114929 ATTGACCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACG 114985 | || ||||| || | || |||||| || || | || ||| | || || || Sbjct 2999 AACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACA 2940 Query 114986 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG 115045 || | |||||||| || ||||| || || || || || ||||| | ||| || Sbjct 2939 CGCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGTG 2880 Query 115046 GCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC 115105 || | || | || ||| | ||| ||||| || |||||||| ||||| ||||| Sbjct 2879 GCACGGATGTTGTGCATGCTGACACCGATACCACCGGCCCACTTGGAGATGCAAGCGCAG 2820 Query 115106 TCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAG 115165 | | |||| || | ||||| || ||||| |||||| |||| | || | | |||||| Sbjct 2819 TTCTTGAGCGTGTCATAGATACCCTCGATGGAGTCATCCTTCATAGCAAGCAAGAAGCAC 2760 Query 115166 CTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 ||| | || || | || |||||||||||||| | |||||| |||||||| |||| Sbjct 2759 GACGATAGCTGAGGACGAGGCGTACCAGCGTTGAACAAGGTTGGCGTCGCGTGCGTGAAG 2700 Query 115226 ATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATA 115285 | |||||||| | ||||||||||| | | || | |||||||||| ||| ||| Sbjct 2699 AAGTTCTGGGACATGTATTCGTAGGTCTCGAGCGCCGCCGCAATGTCTTCCTTGTGGATA 2640 Query 115286 CCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTC 115345 || || || |||| || ||| | || || ||||||| | ||| | | | | Sbjct 2639 CCAATGCTCACACGCAAAATCATCTGCTGTGGACGCTCCATCACCTTGCCACCAATGCGC 2580 Query 115346 TGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 115383 | | ||| |||||| | ||||||| ||||| || Sbjct 2579 AGCAAGTACGACTTCTCAAGCGTCTTGAAGCCAAAGTA 2542 >seq176 Length=73234 Score = 233 bits (258), Expect = 2e-56 Identities = 563/844 (67%), Gaps = 21/844 (2%) Strand=Plus/Minus Query 114459 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 114518 |||| || |||||||| ||||| || || ||||||| | ||||||| ||| ||||||| Sbjct 73079 ACTTCGGTAGGGCGATCGACGCAAGGTTGCACACAGCGACCTCATCCGAATCTGTGTACT 73020 Query 114519 CTATAATTTCCGTACACAAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTG 114575 | || | || ||||| || ||| || || || | ||||| || || | Sbjct 73019 CGATCACCTCACAGCACAAGTTG---CTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCG 72963 Query 114576 ACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACT 114635 |||| || |||||||||||| ||||| || ||||| |||||||| | || |||| Sbjct 72962 ACTTGCGATTCGCCGCATCCTTGTACAGCATATACGGCGTACCCGTCTCGATCTGTGACT 72903 Query 114636 TGAGAATAGCCTTCCAGACATCGGCGGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTC 114690 ||| || || ||||| || |||| |||| | ||| ||| || ||||| Sbjct 72902 CGAGGATGGCGAACCAGA-----GCTGCTGAGCACGGATGGTCTTGCGAGCCTTTCCCTC 72848 Query 114691 CTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 114750 | || ||||| | ||| | | || ||||| || ||| | ||| |||| ||| | Sbjct 72847 AGCTTCATACTTGGCGTACAACGTCTCGAACTCCTCGCCCCAGCACTCGTAGAGACCTTG 72788 Query 114751 TGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAG 114810 || | | ||||||||| | | ||||| ||| | |||| |||||||||||||| | Sbjct 72787 AGCTTCGTTTGGGCAGAACAAACTCCATTCACCGTTCGCCTCCACACGCTTCATGAACAA 72728 Query 114811 GTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATT 114870 ||||||||||| | | | ||||| || ||| ||| |||| || || || Sbjct 72727 ATCTGGGATCCACAACCCGTAAAAGAGGTCACGAGCACGATGGAGCTCATTACCGTGGTT 72668 Query 114871 GAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGAT 114930 ||| ||||| || || | ||| ||||||||||| || |||| ||| | |||| Sbjct 72667 CTTCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGAA 72608 Query 114931 TGACCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCG 114987 || ||||| || | || |||||| || || | || ||| | || || || || Sbjct 72607 CGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACACG 72548 Query 114988 AAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGC 115047 | |||||||| || ||||| || || || || || ||||| | ||| |||| Sbjct 72547 CAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGTGGC 72488 Query 115048 TCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTC 115107 | || | || || ||||| || || || |||||||| ||||| ||||| | Sbjct 72487 ACGGATGTTGTGCATACTGATACCGATGCCACCGGCCCACTTGGAGATAGATGCGCAGTT 72428 Query 115108 CGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCT 115167 | |||| || ||||||| || || || |||||| |||| | || | | ||| || Sbjct 72427 CTTGAGCGTGTCGTAGATACCCTCAATGGAGTCATCCTTCATGGCAAGCAAGAAACACGA 72368 Query 115168 CGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACAT 115227 ||||| || || | ||| ||||| | |||||| || ||||||| |||| |||| | Sbjct 72367 CGACAACTGAGGGCGTGGCGTACCCGAGTTGAAAAGAGTTGGTGAGCCGTGAGTGAAGAA 72308 Query 115228 ACCTTGGGACATCTTATCGTAGGTCTCCAAGA-CGGCGGGAATGTCTTCCCCGTGAATAC 115286 ||||||||||| | ||||| ||| |||| | ||| || ||||| ||| || | Sbjct 72307 GCCTTGGGACATGTAGTCGTACATCT-GAAGAGCACCGGCGATATCTTCTTTGTGGATGC 72249 Query 115287 CGAT 115290 |||| Sbjct 72248 CGAT 72245 >seq715 Length=275277 Score = 208 bits (230), Expect = 9e-49 Identities = 559/848 (66%), Gaps = 10/848 (1%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || ||||| ||||||||||||||||| ||||| || | | ||| | Sbjct 111547 CTTGGAGTATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCAT 111488 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | ||||||||||| | ||| | || | | || |||| | ||| Sbjct 111487 ATCCATCCAGTCAAATGGGTTAGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTGGAG 111428 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 |||||||| | |||| |||| ||||||| |||| | | |||||||||||||| || Sbjct 111427 AAGACGATCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAG 111368 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | |||||||| |||| || |||| ||||||| || ||||| || | || || Sbjct 111367 CTCGACTGGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCATCACTGACAAT 111308 Query 125992 GGCGTGAATGGTGTCCACCCCAGGT--CTATTGCGCAAAGTCTTGAAGAGTTCCACGGCA 126049 |||| || | | || | || | ||| | | ||| |||| ||| Sbjct 111307 CTCGTGGAT--TCGCGACTCTGGGAGACGGTTGACAAGCTTGTTGTAGAGCAAGCAGGCG 111250 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || ||||||||| |||||||| ||| || || |||||||||| || || ||| Sbjct 111249 AAGTCACAGTGGAGACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGC 111190 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 |||||||| |||||||| | |||||| | || || || ||||||||||||||||| ||| Sbjct 111189 ATGAGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCC 111130 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCG-ACTTTGTGTCAAACCA 126228 || | ||||| || | || |||||||||||| | | ||| || || |||| |||| Sbjct 111129 TCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCG-GCGTTCTCTGAGTCACACCA 111071 Query 126229 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 | |||||| | ||||| |||| | || |||| |||| || || || | Sbjct 111070 GCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAA 111011 Query 126289 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 126348 | ||||| || | | ||| ||||||||| | || || | || || |||| Sbjct 111010 GTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGTACATTTCCGA 110951 Query 126349 GTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGT 126406 ||||| | ||| |||||| ||| | ||||||| |||| ||||| | ||| Sbjct 110950 GTGGATGTTCTCA--ATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAGGCACCTGG 110893 Query 126407 ACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAA 126466 || || | | || || | | ||||| ||||| ||||| |||| || Sbjct 110892 ACTTCGTTGCTGAAGTTCATGGCAAGGTTCTCGTTCACAATACCATCACTGGCAGCGAAG 110833 Query 126467 AACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCA 126526 ||||| || | | ||| ||||| | | ||||| ||| ||| | | |||||| | Sbjct 110832 AACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCATGTTGCCCCAGTCCTTG 110773 Query 126527 AGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAG 126586 || || | | ||||| | |||||| | ||||| ||| || |||||||| || Sbjct 110772 AGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCGCCTTCTTGTAC 110713 Query 126587 AGTTCCCA 126594 | ||||| Sbjct 110712 ATATCCCA 110705 >seq141 Length=89168 Score = 96.9 bits (106), Expect = 4e-15 Identities = 255/379 (67%), Gaps = 18/379 (5%) Strand=Plus/Minus Query 171726 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 171785 |||| || ||||||||||| | ||||| || ||||||||||| | ||| | ||| Sbjct 24728 AACCAGTACCAATACCTTCACTACCGTTGACAAGAACCATTGGGATGACTGGAACATACC 24669 Query 171786 AGTCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 | || ||||| |||| | |||||||| || | |||||||| || || ||| | Sbjct 24668 ACTCAGGTTCGATCGATTGACCATCATCGTCAAGGTAGTTGAGAACATCGTTATCCAGTG 24609 Query 171846 GATCAAAGATTTTACGAGCATCCTTGGT--GAGTTTTGTGAAGATGTACC--TCGTTTGA 171901 |||| |||| |||||| ||| ||| || ||||||||||| | | ||| Sbjct 24608 GATCGAAGAGGCATCGAGCA--AGAGGTTCGAGGTTGGTGAAGATGTAACGAGGGCTTG- 24552 Query 171902 GACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTG 171961 || || ||||| ||||| | ||||| || || ||||| || || | |||| Sbjct 24551 CAC-TGTCCTTGCCTCCCATCAATCGCGTACCGAACTGACCGTTTGGCGAGAGCAAATTG 24493 Query 171962 ATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACT 172021 || ||||| |||| | |||| | |||| |||||||| ||| ||| | ||| Sbjct 24492 ATGTTGTTGCTGCCCACGAAGTCTTGCGCCATGTTGACAATTGTA-CCG---TATATACT 24437 Query 172022 ----TCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAA-CTGTGCCACCT 172076 |||||||||||||| ||||| | |||| ||| || || |||| || || |||| Sbjct 24436 TGCCTCACCGTGATGGTAAGCCGAATGCTCCGAGACGTA-TCCTCCAAGTTGGGCGACCT 24378 Query 172077 TCATCTCATCCTTGAGGTT 172095 | || || ||| ||||| Sbjct 24377 TGATTTCCGTCTTCAGGTT 24359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597348193949920