Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq56 136 4e-27 seq52 109 6e-19 >seq56 Length=164687 Score = 136 bits (150), Expect = 4e-27 Identities = 168/226 (74%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| ||||| || |||||| || || ||||| || | || || || | Sbjct 65741 ACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCC 65682 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| || || ||||||||||| | ||| | | ||||| Sbjct 65681 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTT 65622 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGAT---TCCACATCGACCG 42168 |||| ||| || || |||| ||| | || | |||| |||| || ||||||| || Sbjct 65621 GTCCTGGATCTTCTGCTTGA-CGTTGTCAATGCTGTC---CGATGGCTCGACATCGAGCG 65566 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 ||||||| |||||||| || ||||| |||||||| ||||| || || Sbjct 65565 TGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTTTAC 65520 >seq52 Length=165522 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| ||||| || |||||| || || ||||| || | || || || |||| || Sbjct 10618 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTC 10677 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||||||||| || || | ||||||||| || | || | || ||||||||| Sbjct 10678 GAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTG 10737 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||| || || |||| | | | || ||| | || || || | ||| ||||| || Sbjct 10738 GATCTTCTGCTTGACATTGTCAATCGAGTCCGAAGGCTCGACGTCCAACGTAATGGTCTT 10797 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||||| || ||||| || ||||| ||||| || Sbjct 10798 GCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 10830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543207883924160