Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq52 140 3e-28 seq715 82.4 7e-11 >seq52 Length=165522 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || || || | |||||| || | ||||||||| || || || ||||| || Sbjct 29024 TCCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGA 28965 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| || || ||||| || ||||| ||||||||||||||||||| ||||| Sbjct 28964 GAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGATCTGGAGG 28905 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||||||| ||| |||||||| | |||| || | | ||||| | ||||| Sbjct 28904 AATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTG-TCAATCGAGTCCGAAGGCTCGA 28846 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | ||| || || |||| || || || || |||||||| Sbjct 28845 CGTCAAGCGTGATCGTCTTACCCGTCAACGTCTTCACGAAGATCTGCAT 28797 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | || | |||||| || | ||||||||| || || || ||||| || Sbjct 10600 TCCGCCACGAAGGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGA 10659 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || || || ||||| || ||||| ||||||||||||||||||| ||||| Sbjct 10660 GAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGG 10719 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| ||| |||||||||| | || | | ||||| | |||||| Sbjct 10720 AATGCCTTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATCGAGTCCGAAGGCTCGAC 10779 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| || || || || || || |||||||| Sbjct 10780 GTCCAACGTAATGGTCTTGCCCGTGAGTGTCTTGACGAAGATCTGCAT 10827 >seq715 Length=275277 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| ||| | | ||| | |||||||||| || ||||| || || || ||| Sbjct 111374 GGTATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTC--- 111430 Query 47472 CA-GCTAAAG-TATCCC-AAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAAC 47528 || ||| | | || | ||||| ||| || | || ||||| || | ||| | | Sbjct 111431 CACGCTCTTGGTGTCTCGAAGATCTACAACGCGTCTAACCCATTTGACTGGATGGATATG 111490 Query 47529 ATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || |||||| |||||||||||||||| ||||||||||| || || ||||| Sbjct 111491 ATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGAATA 111540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496496717760