Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq598 262 5e-65 seq176 251 9e-62 seq715 194 2e-44 seq141 114 2e-20 >seq598 Length=3624 Score = 262 bits (290), Expect = 5e-65 Identities = 628/939 (67%), Gaps = 23/939 (2%) Strand=Plus/Minus Query 116420 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 116479 |||| ||||| || || ||||| || || || |||| ||||||| ||| ||||||| Sbjct 3469 ACTTTGGAAGAGCAATCGACGCGAGGTTGCATACAGCCACCTCATCCGAATCTGTGTACT 3410 Query 116480 CTATAATTTCCGTACACAAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTG 116536 | || | || ||||| || ||| || || || | ||||| || || | Sbjct 3409 CGATCACCTCACAGCACAAGTTG---CTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCG 3353 Query 116537 ACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACT 116596 |||| ||| ||| |||||||| | ||| || ||||| |||||||| | || |||| Sbjct 3352 ACTTGCGGTTGGCCGCGTCCTTGTACAACATGTAAGGCGTACCCGTCTCGATCTGCGACT 3293 Query 116597 TGAGAATAGCCTTCCATACATCGGCGGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTC 116651 ||||||||| ||| | || |||| |||| | ||| ||| || ||||| Sbjct 3292 CGAGAATAGCGAACCAGA-----GCTGCTGAGCACGGATGGTCTTGCGAGCCTTTCCCTC 3238 Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTG-AGAGCCCTG 116710 | |||||||| | ||| | | ||| |||||||||||| |||| ||| |||| || | Sbjct 3237 AGCTTCGTACTTGGCGTACAACGTCTCGAACTCTTCACCC-CAGCAGCTGTAGAGGCCAG 3179 Query 116711 GTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 116770 | |||| | || ||||| | | ||| | || | || || ||||||||||| | Sbjct 3178 GGGCCTCGTTCGGGCAGAACAAACTCCAGTCGCCGTTCGATTCCACACGCTTCATGAACA 3119 Query 116771 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTGA 116829 ||||||||||| | ||| |||| | ||| ||| || | | || ||| || || Sbjct 3118 AATCTGGGATCCACAACGCGTAGAATAAATCACGAGCACGGTGGAGCT-CATTACCGTGG 3060 Query 116830 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 116889 || ||| ||||| || || | ||| ||||||||||| || |||| ||| | ||| Sbjct 3059 TTCTTCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCG 3000 Query 116890 ATTGACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACG 116946 | || |||||||| | || |||||| || || | ||||| |||| || || Sbjct 2999 AACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACA 2940 Query 116947 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTG 117006 || | |||||||| || ||||| || || || || || ||||| | || || Sbjct 2939 CGCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGTG 2880 Query 117007 GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCAC 117066 || | || | ||| ||| | ||| ||||| || |||||||| ||||| ||||| Sbjct 2879 GCACGGATGTTGTGCATGCTGACACCGATACCACCGGCCCACTTGGAGATGCAAGCGCAG 2820 Query 117067 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAG 117126 | | |||| || | ||||| || ||||| |||||| |||| | || | | |||||| Sbjct 2819 TTCTTGAGCGTGTCATAGATACCCTCGATGGAGTCATCCTTCATAGCAAGCAAGAAGCAC 2760 Query 117127 CTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 ||| | || || | || |||||||||||||| | |||||| |||||||| |||| Sbjct 2759 GACGATAGCTGAGGACGAGGCGTACCAGCGTTGAACAAGGTTGGCGTCGCGTGCGTGAAG 2700 Query 117187 ATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATA 117246 | |||||||| | ||||||||||| | | | | |||||||||| ||| ||| Sbjct 2699 AAGTTCTGGGACATGTATTCGTAGGTCTCGAGCGCCGCCGCAATGTCTTCCTTGTGGATA 2640 Query 117247 CCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTC 117306 || || || |||| || ||| | || || ||||||| | ||| | | | | Sbjct 2639 CCAATGCTCACACGCAAAATCATCTGCTGTGGACGCTCCATCACCTTGCCACCAATGCGC 2580 Query 117307 TGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAG 117345 | | ||| |||||| | ||||||| ||||| ||| Sbjct 2579 AGCAAGTACGACTTCTCAAGCGTCTTGAAGCCAAAGTAG 2541 >seq176 Length=73234 Score = 251 bits (278), Expect = 9e-62 Identities = 569/845 (67%), Gaps = 23/845 (3%) Strand=Plus/Minus Query 116420 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 116479 |||| || |||||||| ||||| || || ||||||| | ||||||| ||| ||||||| Sbjct 73079 ACTTCGGTAGGGCGATCGACGCAAGGTTGCACACAGCGACCTCATCCGAATCTGTGTACT 73020 Query 116480 CTATAATTTCCGTACACAAATTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTG 116536 | || | || ||||| || ||| || || || | ||||| || || | Sbjct 73019 CGATCACCTCACAGCACAAGTTG---CTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCG 72963 Query 116537 ACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACT 116596 |||| || |||||||||||| |||||||| ||||| |||||||| | || |||| Sbjct 72962 ACTTGCGATTCGCCGCATCCTTGTACAGCATATACGGCGTACCCGTCTCGATCTGTGACT 72903 Query 116597 TGAGAATAGCCTTCCATACATCGGCGGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTC 116651 ||| || || ||| | || |||| |||| | ||| ||| || ||||| Sbjct 72902 CGAGGATGGCGAACCAGA-----GCTGCTGAGCACGGATGGTCTTGCGAGCCTTTCCCTC 72848 Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTG 116710 | || ||||| | ||| | | ||| ||||| || ||| |||| ||| |||| ||| Sbjct 72847 AGCTTCATACTTGGCGTACAACGTCTCGAACTCCTCGCCC-CAGCACTCGTAGAGACCTT 72789 Query 116711 GTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 116770 | || | | ||| ||||| | | ||||| ||| | |||| || ||||||||||| | Sbjct 72788 GAGCTTCGTTTGGGCAGAACAAACTCCATTCACCGTTCGCCTCCACACGCTTCATGAACA 72729 Query 116771 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 116830 ||||||||||| | | | | ||||| || ||| ||| |||| || || | Sbjct 72728 AATCTGGGATCCACAACCCGTAAAAGAGGTCACGAGCACGATGGAGCTCATTACCGTGGT 72669 Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 | ||| ||||| || || | ||| ||||||||||| || |||| ||| | |||| Sbjct 72668 TCTTCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGCGA 72609 Query 116891 TTGACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGC 116947 || |||||||| | || |||||| || || | ||||| |||| || || | Sbjct 72608 ACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACACAC 72549 Query 116948 GAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGG 117007 | | |||||||| || ||||| || || || || || ||||| | || ||| Sbjct 72548 GCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGTGG 72489 Query 117008 CTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACT 117067 | | || | ||| || ||||| || || || |||||||| ||||| |||||| | Sbjct 72488 CACGGATGTTGTGCATACTGATACCGATGCCACCGGCCCACTTGGAGATAGATGCGCAGT 72429 Query 117068 CCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGC 117127 | |||| || ||||||| || || || |||||| |||| | || | | ||| || Sbjct 72428 TCTTGAGCGTGTCGTAGATACCCTCAATGGAGTCATCCTTCATGGCAAGCAAGAAACACG 72369 Query 117128 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA 117187 ||||| || || | ||| ||||| | |||||| || ||||||| |||| |||| | Sbjct 72368 ACGACAACTGAGGGCGTGGCGTACCCGAGTTGAAAAGAGTTGGTGAGCCGTGAGTGAAGA 72309 Query 117188 TACCTTGGGACATCTTATCGTAGGTCTCCAAGA-CAGAGGGAATGTCTTCCCCGTGAATA 117246 ||||||||||| | ||||| ||| |||| || || || ||||| ||| || Sbjct 72308 AGCCTTGGGACATGTAGTCGTACATCT-GAAGAGCACCGGCGATATCTTCTTTGTGGATG 72250 Query 117247 CCGAT 117251 ||||| Sbjct 72249 CCGAT 72245 >seq715 Length=275277 Score = 194 bits (214), Expect = 2e-44 Identities = 558/851 (66%), Gaps = 12/851 (1%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||||||||| ||||| || | ||| ||| | Sbjct 111547 CTTGGAGTATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCAT 111488 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 127344 ||||| | ||||||||||| | ||| | || | | || |||| | ||| Sbjct 111487 ATCCATCCAGTCAAATGGGTTAGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTGGAG 111428 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 |||||||| | |||| |||| ||||||| |||| | | |||||||||||||| || Sbjct 111427 AAGACGATCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAG 111368 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | |||||||| |||| || |||| ||||||| || || || || | || || Sbjct 111367 CTCGACTGGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCATCACTGACAAT 111308 Query 127465 GGCGTGAATAGTGTCCACCCCAGGT--CTATTGCGTAAAGTCTTGAAGAGTTCCA-CAG- 127520 |||| || | | || | || | ||| | | ||| |||| | | ||| Sbjct 111307 CTCGTGGAT--TCGCGACTCTGGGAGACGGTTGACAAGCTTGTTGTAGAG--CAAGCAGG 111252 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 | || || ||||||||| |||||||| ||| || || |||||||||| || || | Sbjct 111251 CGAAGTCACAGTGGAGACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAG 111192 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640 |||||||||| |||||||| | |||||| | || || || || || ||||||||||| | Sbjct 111191 GCATGAGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATAC 111132 Query 127641 CCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACC 127700 |||| | ||||| || | | |||||| ||||| | | | || || ||| ||| Sbjct 111131 CCTCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACACC 111072 Query 127701 ACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA 127760 | | |||||| | ||||| |||| | ||||||| |||| || || || | Sbjct 111071 AGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACA 111012 Query 127761 GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGC 127820 | ||||| || | | ||| ||||||||| | || || | || || |||| Sbjct 111011 AGTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGTACATTTCCG 110952 Query 127821 CGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTG 127878 ||||| | ||| |||||| ||| | ||||||| |||| ||||| | ||| Sbjct 110951 AGTGGATGTTCTCA--ATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAGGCACCTG 110894 Query 127879 TACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 127938 || || | | || || | | ||||| ||||| ||||| |||| || Sbjct 110893 GACTTCGTTGCTGAAGTTCATGGCAAGGTTCTCGTTCACAATACCATCACTGGCAGCGAA 110834 Query 127939 AAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTC 127998 ||||| || | | ||| ||||| | | ||||| ||| ||| | | |||||| | Sbjct 110833 GAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCATGTTGCCCCAGTCCTT 110774 Query 127999 GAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATA 128058 ||| || | ||||| | |||||| | ||||| ||| || |||||||| || Sbjct 110773 GAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCGCCTTCTTGTA 110714 Query 128059 GAGTTCCCAGA 128069 | ||||||| Sbjct 110713 CATATCCCAGA 110703 >seq141 Length=89168 Score = 114 bits (126), Expect = 2e-20 Identities = 259/379 (68%), Gaps = 18/379 (5%) Strand=Plus/Minus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||| || ||||||||||| | ||||| || ||||||||||| | ||| | ||| Sbjct 24728 AACCAGTACCAATACCTTCACTACCGTTGACAAGAACCATTGGGATGACTGGAACATACC 24669 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | || ||||| |||| | ||||||||||| | |||||||| || || |||| | Sbjct 24668 ACTCAGGTTCGATCGATTGACCATCATCGTCAAGGTAGTTGAGAACATCGTTATCCAGTG 24609 Query 175866 GATCAAAGATTTTACGAGCATCCTTGGT--GAGTTTTGTGAAGATGTACC--TCGTTTGA 175921 |||| |||| |||||| ||| ||| || ||||||||||| | | ||| Sbjct 24608 GATCGAAGAGGCATCGAGCA--AGAGGTTCGAGGTTGGTGAAGATGTAACGAGGGCTTG- 24552 Query 175922 GACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTG 175981 || || ||||| ||||| | ||||| || || ||||| |||| || | |||| Sbjct 24551 CAC-TGTCCTTGCCTCCCATCAATCGCGTACCGAACTGACCGTTTGGCGAGAGCAAATTG 24493 Query 175982 ATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACT 176041 || ||||| ||||| |||| | ||||| |||||||| ||| ||| | ||| Sbjct 24492 ATGTTGTTGCTGCCCACGAAGTCTTGCGCCATGTTGACAATTGTA-CCG---TATATACT 24437 Query 176042 ----TCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAA-CTGCGCCACCT 176096 |||||||||||||| ||||| | |||| || || || |||| || || |||| Sbjct 24436 TGCCTCACCGTGATGGTAAGCCGAATGCTCCGAGACGTA-TCCTCCAAGTTGGGCGACCT 24378 Query 176097 TCATCTCATCCTTGAGGTT 176115 | || || ||| ||||| Sbjct 24377 TGATTTCCGTCTTCAGGTT 24359 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 177708 TCACGATGGAAAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTC 177767 || ||| || || |||| |||| |||| || ||||||||||||||||| || || || | Sbjct 22589 TCTCGACGGTGAATTCCGTGGAGAAGATATTGGTCAACTTGGCACCGTAACCGTTTCGAC 22530 Query 177768 CACCAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAGG 177827 |||| ||| | |||| |||| ||| ||| |||| | | || | |||||||| ||| Sbjct 22529 CACCGACAGTCTTCTTTTTGTCGTCGTCGAAGTTACTTCCGGTCAAGAGGTGACCGAAGA 22470 Query 177828 TAAGTTCTGGA 177838 | ||||| ||| Sbjct 22469 TGAGTTCCGGA 22459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613501647759840