Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq715 132 8e-26 seq655 114 2e-20 >seq715 Length=275277 Score = 132 bits (146), Expect = 8e-26 Identities = 412/627 (66%), Gaps = 27/627 (4%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| | || || ||||| | | |||||||| Sbjct 111526 CTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCATCCAGTCAAATGGGTT 111467 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| ||| ||||| | || ||||| || | | || || || || || Sbjct 111466 AGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTGGAGAAGACGATCAGCGACGAACTC 111407 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || | |||| || || | ||| || ||||||| ||| Sbjct 111406 GATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAGCTCGACTGGGAGCGAGTCCTT 111347 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 | ||||||||||| ||| ||| || || | ||||||| || || || || | Sbjct 111346 GACGAACTCCTTCTCGATCGTGACGGCATCACTGACAATCTCGTGGATTCG--CG-ACTC 111290 Query 159889 CGGC------TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 || ||| | | ||| || | || | ||| || ||||| ||||| || Sbjct 111289 TGGGAGACGGTTGACAAGCTTGTTGT------AGAGCAAGCAGGCGAAGTCACAGTGGAG 111236 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 || ||||| ||| ||| | |||||| || | | ||||||| ||||||| |||||| Sbjct 111235 ACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCACGCTT 111176 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAA 160061 |||||||| || | | ||| || | | | | || ||||| ||||| | ||| || | Sbjct 111175 CTTGAGCCAGAAGACCGA-GCAGAACGAACCCGAGAAGAAGATACCCTCAATGGCAGCGA 111117 Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTTTG---GCC 160117 | || |||| | |||| |||| | |||||| || || ||| |||| | ||| Sbjct 111116 AGGCGACGACACGCTCAGCAAACGCGGCGTTC---TC-TGAGTCACACCAGCGGAGCGCC 111061 Query 160118 CATTCAGCCTTCTT-TGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTG 160176 || | |||||||| ||| | ||| || || ||| | |||| ||||| || || Sbjct 111060 CAGTTGGCCTTCTTCTGC-ACGCATGGGATTGTCTCAATGGCGCGGAACAAGTGGTTCTT 111002 Query 160177 CTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATT 160236 ||| |||||||||| || |||||| | |||||||||||| | ||| | || Sbjct 111001 CTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGTACATTTCCGAGTGGATGTT 110942 Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAA 160263 || ||||| ||||| ||| |||||| Sbjct 110941 CTCAATGGCAATCTGGAAGCCGTAGAA 110915 >seq655 Length=2523 Score = 114 bits (126), Expect = 2e-20 Identities = 163/227 (72%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897 ||||||||| |||||||| || |||||| | ||| ||| | | || |||||||| | Sbjct 2233 CTTGTCCACAGTGAACTGGATCGCGTTCGCCTTTGGC-TGCGTGCGGAGGTAGTACATAC 2291 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 | ||||| || ||||||| ||| | || | |||||| || | || || || | | | Sbjct 2292 CTGTCTTCAGTCCCTTCTTCCATGCATAGAAGTGCATCGACGTCAACTTACTGATCGTCG 2351 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 | || || || || | ||| || ||||| || ||| |||||||| | || || |||| Sbjct 2352 GCTCAGCAATATGCACGTTGAGCGACTGACTCTGGCAGATGAAAGCACCACGGTCGGCGG 2411 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAAC 204064 |||| | | || | ||||||| |||||||||||||||||| || Sbjct 2412 CCATGTCAAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTAC 2458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795148003845440