Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq56 150 4e-31 seq125 109 1e-18 seq52 102 2e-16 >seq56 Length=164687 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| | ||||||||||| |||| ||||||||| | | || Sbjct 65746 CGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTG 65687 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||| |||||||||||||| || ||||||| Sbjct 65686 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCT 65627 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||| ||| || | | |||| | || || ||||| | | Sbjct 65626 TCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAGC 65567 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| ||||| |||||||| || || Sbjct 65566 GTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTG 65529 >seq125 Length=98586 Score = 109 bits (120), Expect = 1e-18 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | |||||| ||||||||||| |||| ||||||||| | ||| || Sbjct 38531 CGAAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAAGGTG 38590 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || |||||||| ||||||||||| || ||| ||||||| Sbjct 38591 CGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCT 38650 >seq52 Length=165522 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || |||||||| |||| ||||||||| | | || | || || || |||||||| || Sbjct 28993 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCGTCCTCGAGCTGCTTGCCA 28934 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| | |||||||| || ||| ||| || || ||||| ||||| |||||| Sbjct 28933 GCAAAGATCAATCGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 28874 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| || | | ||| | | || || || | |||||||||||||||||| | || Sbjct 28873 ACGTTGTCAATCGAGTCCGAAGGCTCGACGTCAAGCGTGATCGTCTTACCCGTCAACGTC 28814 Query 199613 TTCACAAAAATTTG 199626 ||||| || || || Sbjct 28813 TTCACGAAGATCTG 28800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178910664028508