Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq56 161 1e-34 seq52 138 1e-27 >seq56 Length=164687 Score = 161 bits (178), Expect = 1e-34 Identities = 172/223 (77%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||||| || |||||| ||||| |||||||| || || ||||| | Sbjct 65741 ACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCC 65682 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| |||||||||||||||||||| |||| ||||||||||| | || | | ||||| Sbjct 65681 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTT 65622 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGAT---TCCACATCCACCG 46553 |||| |||||||| ||||| ||| | || | |||| |||| || ||||| | || Sbjct 65621 GTCCTGGATCTTCTGCTTGA-CGTTGTCAATGCTGTC---CGATGGCTCGACATCGAGCG 65566 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||||||| ||||||||||| || || |||||||| ||||| || Sbjct 65565 TGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTT 65523 >seq52 Length=165522 Score = 138 bits (152), Expect = 1e-27 Identities = 166/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 || || | ||||| ||||| ||| |||||| ||||| |||||||| || || ||||| Sbjct 29014 AAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGA 28955 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 |||| |||||||||||||| || || ||||| |||||||| || | || | | |||| Sbjct 28954 CCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATACCCTCC 28895 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGT 46554 |||||| |||||||| ||| | ||| | | | || ||| | || || || | ||| Sbjct 28894 TTGTCCTGGATCTTCTGCTTCA-CGTTGTCAATCGAGTCCGAAGGCTCGACGTCAAGCGT 28836 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| || || ||||||| ||| || || ||||| ||||| ||| Sbjct 28835 GATCGTCTTACCCGTCAACGTCTTCACGAAGATCTGCATCTTG 28793 Score = 134 bits (148), Expect = 2e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| ||| |||||| ||||| |||||||| || || || || |||| || Sbjct 10618 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTC 10677 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||| || || || ||||| |||||||| || | || | || ||||||||| Sbjct 10678 GAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTG 10737 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||||| ||||| | | | || ||| | || || |||| ||| ||||| || Sbjct 10738 GATCTTCTGCTTGACATTGTCAATCGAGTCCGAAGGCTCGACGTCCAACGTAATGGTCTT 10797 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||||| || || || || ||||| ||||| ||| Sbjct 10798 GCCCGTGAGTGTCTTGACGAAGATCTGCATCTTG 10831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565233284592480