Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq715 241 1e-58 seq56 143 3e-29 seq52 122 9e-23 >seq715 Length=275277 Score = 241 bits (266), Expect = 1e-58 Identities = 437/633 (69%), Gaps = 10/633 (2%) Strand=Plus/Minus Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 ||| | | |||||| || ||||| || || | || ||||| | || || ||||| Sbjct 111267 TTGTAGAGCAAGCAGGCGAAGTCACAGTGGAGACCTTCGTCACGACTGATAAGCTCGTTC 111208 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 ||| | | ||| |||||||| || || || |||||||| || | | | ||| Sbjct 111207 GAGAAGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAA 111148 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC- 133061 ||||| ||||||| ||||| | ||| ||||| || || | ||||| | |||| ||| Sbjct 111147 CCCGAGAAGAAGATACCCTCAATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCG 111088 Query 133062 TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGT 133121 |||| || | | |||||| |||||||| | |||||| | | ||||| || || || Sbjct 111087 TTCTCTGA-GTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGT 111029 Query 133122 TTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGAT 133178 || |||||| ||||| || |||| || | || | | | ||| ||||| || Sbjct 111028 CTCAATGGCGCGGAACAAGTGG---TTCTTCTCGGCGGCATCCTTGATGTACGTGTCAAT 110972 Query 133179 GAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCA 133238 | ||| |||||||||||||| | |||||| ||||| || || |||||||| ||||| Sbjct 110971 CAACAGCGAGTACATTTCCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCA 110912 Query 133239 CCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGAT 133298 || || || |||||| ||||| | ||| | | | || || ||||| || || Sbjct 110911 GCGGGCTTCAGGCACCTGGACTTCGTTGCTGAAGTTCATGGCAAGGTTCTCGTTCACAAT 110852 Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358 || || ||||| ||||| || || ||||||||||||||||| || ||||| |||||| | Sbjct 110851 ACCATCACTGGCAGCGAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGT 110792 Query 133359 CAAGCGCTCCCAGTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACG 133417 || | ||||||| | | | | || || || || | ||||||||| ||||| || Sbjct 110791 CATGTTGCCCCAGTC-CTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGC 110733 Query 133418 ACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAA 133477 || || || || ||||||||| ||| || ||| | || || || || | ||| | Sbjct 110732 TGGCTTCCGCCTTCTTGTACATATCCCAGATCTCCTTCTCCTGGATCGGGAAGAGCACGA 110673 Query 133478 ACCGGCGGGGGTTTTCGCGCAACAGCGGCTCCG 133510 | ||| ||||| ||||| | ||| ||||||| Sbjct 110672 ATCGGTTTGGGTTCTCGCGAAGCAGAGGCTCCG 110640 >seq56 Length=164687 Score = 143 bits (158), Expect = 3e-29 Identities = 166/221 (75%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || || |||||||| |||||||| |||| |||||| | Sbjct 65522 AAAGATGCAGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACGCTCGATGTCGAGCC 65581 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | |||||| | | |||| | || | || |||| ||||| || |||||||| | | Sbjct 65582 ATCGGACAGCATTGACAACG-TCAAGCAGAAGATCCAGGACAAGGAAGGAATTCCACCAG 65640 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||| Sbjct 65641 ACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACT 65700 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||| ||||| |||| |||| |||||||| ||| Sbjct 65701 ACAACATCCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGT 65741 >seq52 Length=165522 Score = 122 bits (134), Expect = 9e-23 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || || ||||| || ||||| || ||| | ||||| || || ||||| | ||||||||| Sbjct 28791 AACAAGATGCAGATCTTCGTGAAGACGTTGACGGGTAAGACGATCACGCTTGACGTCGAG 28850 Query 38298 GCCACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | | ||| | || |||| | || | || |||| ||||| ||||| ||||| | Sbjct 28851 CCTTCGGACTCGATTGACAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCTCC 28909 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 || || ||||| | || | || ||||| ||||| || |||| ||||||||| || Sbjct 28910 AGATCAGCAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTCTCGGA 28969 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| ||||| | ||| |||| |||||||| || ||| | || || Sbjct 28970 CTACAACATCCAGAAGGAGTCTACGTTGCACTTGGTGCTCCGCTTGCGTGGTGG 29023 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||||||||| ||||| || | ||||||||| | Sbjct 10830 AAGATGCAGATCTTCGTCAAGACACTCACGGGCAAGACCATTACGTTGGACGTCGAGCCT 10771 Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||| | || || | | || | || |||| ||||| || || ||||| | || Sbjct 10770 TCGGACTCGATTGACAATG-TCAAGCAGAAGATCCAGGACAAGGAAGGCATTCCTCCAGA 10712 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| | || | || || || ||||| || |||| || |||||| ||||| Sbjct 10711 TCAGCAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTA 10652 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| | ||| |||| |||||||| || Sbjct 10651 CAACATCCAGAAGGAGTCTACGTTGCACTTGGTGCTCCG 10613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168273436160