Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq598 205 1e-47 seq176 190 3e-43 seq715 161 1e-34 seq2 91.5 2e-13 >seq598 Length=3624 Score = 205 bits (226), Expect = 1e-47 Identities = 585/889 (66%), Gaps = 23/889 (3%) Strand=Plus/Plus Query 111601 TGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA 111660 ||||||| |||||| | ||| | |||| || || |||||||| |||||| | Sbjct 2597 TGATGGAGCGTCCACAGCAGATGATTTTGCGTGTGAGCATTGGTATCCACAAGGAAGACA 2656 Query 111661 TTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACAC 111720 ||| | | | ||||| ||||| | ||||||| | |||| ||||| || | Sbjct 2657 TTGCGGCGGCGCTCGAGACCTACGAATACATGTCCCAGAACTTCTTCACGCACGCGACGC 2716 Query 111721 CAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAA 111780 ||||| | |||||||||||||| || | || || | || || ||| | |||| | Sbjct 2717 CAACCTTGTTCAACGCTGGTACGCCTCGTCCTCAGCTATCGTCGTGCTTCTTGCTTGCTA 2776 Query 111781 ACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAA 111840 ||||| || || ||| | || || || | ||| |||| | || || ||||| | Sbjct 2777 TGAAGGATGACTCCATCGAGGGTATCTATGACACGCTCAAGAACTGCGCTTGCATCTCCA 2836 Query 111841 AGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTA 111900 ||||||| ||||||||||| | ||| || | || | |||| || | ||| Sbjct 2837 AGTGGGCCGGTGGTATCGGTGTCAGCATGCACAACATCCGTGCCACTAACAGTTACATTC 2896 Query 111901 GAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 111960 | ||||| || || || ||||| | |||||||| | || || || |||| ||| | Sbjct 2897 GCGGTACGAACGGATCGTCGAATGGTCTCGTTCCAATGTTGCGTGTGTTCAACGACACGG 2956 Query 111961 CGCGCTATGTAAACCAAGCTG--GGC-GTCGCAAGGGATCTATCGCAGTCTATCTTGAGC 112017 | ||||| || |||| | | ||| |||||||| || |||| |||| | |||| Sbjct 2957 CTCGCTACGTTGACCAGGGCGGAGGCAAGCGCAAGGGTTCGTTCGCCATCTACTTGGAGC 3016 Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077 ||||||||||||| ||| | |||||| | || ||| ||||| ||| |||| | Sbjct 3017 CATGGCACGCGGACATCTTCGAGTTCTTGGACTTGAAGAAGAACCACGGTAATGA-GCTC 3075 Query 112078 CGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTT 112136 | | |||| || ||| | |||| ||| | ||||| |||||| | ||||||||| | || Sbjct 3076 CACCGTGCTCGTGATTTATTCTACGCGTTGTGGATCCCAGATTTGTTCATGAAGCGTGTG 3135 Query 112137 GAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCT-CCGATGC 112195 || || ||| | ||| | | || || || || |||| || || |||| | | ||| Sbjct 3136 GAATCGAACGGCGACTGGAGTTTGTTCTGCCCGAACGAGGCCCCTGGCCTCTACAGCTGC 3195 Query 112196 CGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGA----GGAAGAAAGTCGGGCGA 112251 | |||||| ||||| || | | ||| | |||||||| | ||||| | || | Sbjct 3196 TG-GGGTGAAGAGTTCGAGACGTTGTACGCCAAGTACGAAGCTGAGGGAAAGGCTCGCAA 3254 Query 112252 CTGCGACGGTGC-CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 112310 | | |||| |||| || | ||| ||||||||| |||| || | |||||| Sbjct 3255 GACCATCCGTGCTCAGCAGC-----TCTGGTTCGCTATTCTCGAGTCGCAGATCGAGACG 3309 Query 112311 GGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTG 112370 ||||| || || ||| | ||||| ||||| |||| ||| || || |||| | Sbjct 3310 GGTACGCCTTACATGTTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTC 3369 Query 112371 GGTGTGAT---CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGAT 112427 ||| ||| | ||| |||| | || || | | || | ||||| ||| Sbjct 3370 GGTACGATCCGCTCGAG---CAACTTGTGCTGTGAGGTGATCGAGTACACAGATTCGGAT 3426 Query 112428 GAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGG 112476 ||| |||||| || |||||||| || || ||||| || |||| |||| Sbjct 3427 GAGGTGGCTGTATGCAACCTCGCGTCGATTGCTCTTCCAAAGTTCGTGG 3475 >seq176 Length=73234 Score = 190 bits (210), Expect = 3e-43 Identities = 496/749 (66%), Gaps = 17/749 (2%) Strand=Plus/Plus Query 111601 TGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA 111660 ||||||| |||||| | ||| || | || || ||||| ||||| ||||||| Sbjct 72207 TGATGGAGCGTCCACAGCAGATGATCTTACGCGTGTGTATCGGCATCCACAAAGAAGATA 72266 Query 111661 TTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACAC 111720 | | || | | ||| |||||| | ||||||| || | |||| |||| ||| Sbjct 72267 TCGCCGGTGCTCTTCAGATGTACGACTACATGTCCCAAGGCTTCTTCACTCACGGCTCAC 72326 Query 111721 CAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAA 111780 |||| || |||||| | ||||| ||| | || || |||| |||||| | |||| | Sbjct 72327 CAACTCTTTTCAACTCGGGTACGCCACGCCCTCAGTTGTCGTCGTGTTTCTTGCTTGCCA 72386 Query 111781 ACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAA 111840 ||||| || || || | || || |||| ||| |||| | || || ||||| | Sbjct 72387 TGAAGGATGACTCCATTGAGGGTATCTACGACACGCTCAAGAACTGCGCATCTATCTCCA 72446 Query 111841 AGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTA 111900 ||||||| ||||| ||||| || || || | || | |||| || | ||| Sbjct 72447 AGTGGGCCGGTGGCATCGGTATCAGTATGCACAACATCCGTGCCACTAACAGTTACATTC 72506 Query 111901 GAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 111960 | ||||| || || || ||||| | |||||||| | || || || |||| ||| | Sbjct 72507 GCGGTACGAACGGATCGTCGAATGGTCTCGTTCCAATGTTGCGTGTGTTCAACGACACGG 72566 Query 111961 CGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGC 112017 | ||||| || |||| | || | |||||||| || |||| |||| | |||| Sbjct 72567 CTCGCTACGTTGACCAGGGCGGAGGCAAGCGCAAGGGTTCGTTCGCCATCTACTTGGAGC 72626 Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077 ||||||||||||| ||| | |||||| | || ||| ||||| ||| |||| | Sbjct 72627 CATGGCACGCGGACATCTTCGAGTTCTTGGACTTGAAGAAGAACCACGGTAATGA-GCTC 72685 Query 112078 CGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTT 112136 | |||| || || ||||| | || | ||||| |||||| | ||||||||| | || Sbjct 72686 CATCGTGCTCGTGACCTCTTTTACGGGTTGTGGATCCCAGATTTGTTCATGAAGCGTGTG 72745 Query 112137 GAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGC 112195 |||| || || | ||| | | || || ||| || | || | ||||||| ||| ||| Sbjct 72746 GAGGCGAACGGTGAATGGAGTTTGTTCTGCCCAAACGAAGCTCAAGGTCTCTACGAGTGC 72805 Query 112196 CGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGA----GGAAGAAAGTCGGGCGA 112251 | ||| |||||||| || | | ||| | ||||| || | ||||| | || | Sbjct 72806 TG-GGGCGAGGAGTTCGAGACGTTGTACGCCAAGTATGAAGCTGAGGGAAAGGCTCGCAA 72864 Query 112252 CTGCGACGGTGC-CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 112310 | | |||| |||| || | ||| || || ||| |||| || | |||||| Sbjct 72865 GACCATCCGTGCTCAGCAGC-----TCTGGTTCGCCATCCTCGAGTCACAGATCGAGACG 72919 Query 112311 GGTACACCATATATGCTTTACAAAGACGC 112339 ||||| || |||||||| ||||| || || Sbjct 72920 GGTACGCCGTATATGCTGTACAAGGATGC 72948 >seq715 Length=275277 Score = 161 bits (178), Expect = 1e-34 Identities = 200/271 (74%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 102110 || |||| ||| || ||||||| || |||||||| || | || ||||| | ||| Sbjct 110972 ATTGACACGTACATCAAGGATGCCGCCGAGAAGAACCACTTGTTCCGCGCCATTGAGACA 111031 Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT-CGCG 102169 | ||||| | || ||||| || | ||||| | |||| ||| || || ||| Sbjct 111032 ATCCCATGCGTGCAGAAGAAGGCCAACTGGGCGCTCCGCTGGTGTGACTCAGAGAACGCC 111091 Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 | ||||||||||| || |||| || || ||||||||||||||||||| ||||| Sbjct 111092 G-CGTTTGCTGAGCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTC 111150 Query 102230 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 |||||| | | | |||||||||||||| ||||||||||| || ||| ||||||| || Sbjct 111151 GTTCTGCTCGGTCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAA 111210 Query 102290 CGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||||||||| ||||||||| || |||||| Sbjct 111211 CGAGCTTATCAGTCGTGACGAAGGTCTCCAC 111241 >seq2 Length=488588 Score = 91.5 bits (100), Expect = 2e-13 Identities = 283/427 (66%), Gaps = 16/427 (4%) Strand=Plus/Plus Query 175841 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 175900 || |||||||| ||||||| ||||||| || | |||||| | |||| | |||| || Sbjct 274744 CCAGTACCGATGCCCTCTGAGCCGTTCAACAGCAGCATGGGCAAGATTGGTACGTAGTAG 274803 Query 175901 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATC----TCT 175956 | ||||| | ||| ||||||||| || | ||| | || | | || || ||| Sbjct 274804 TGAGGCTCCACTGGGTAACCATCGTCGTCGACGTAGCTCAGCAACGCGTCGTCGTCTTCT 274863 Query 175957 CGGATCAAAGATCTTTCGGGCAT-CTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAG 176015 ||| || | | || | | ||| || || || ||||| || | | | Sbjct 274864 GGGAACAG----CATACGCGTGTACTTCTGCAAGAAC-GTGAAGATGTAACGAGGACTCG 274918 Query 176016 ACGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTG- 176074 ||||||||||||||| || |||||||| || ||||| | || | || | || | Sbjct 274919 CAGCATCCTTACCACCCTGAAGTCGCGTACCGAATTGACCCGAAGGGTAGAGCA-ATGGC 274977 Query 176075 ATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCG-AGAGAGAC 176133 | ||||| | ||| | |||||| | ||||| || ||||| || | | | || || | Sbjct 274978 AAGTTGTTCGCACCAACGTAGTCCTGCGCCATATTCACAATTGT-TGAGTGAAGTGATGC 275036 Query 176134 TTCACCGTGGTGGTACGCACTCTTCTCTGCGACA-AATGCCGCCAACTGCGCCACTTTCA 176192 ||||||||||||||| || | | ||| | ||| | |||| | ||||||||| || | Sbjct 275037 TTCACCGTGGTGGTATGCCGTATGCTC-ACTACAGTAACCCGCGAGCTGCGCCACCTTGA 275095 Query 176193 TCTCATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGA 176252 || | | |||| || | || ||| ||| ||| ||||| || || || ||||| Sbjct 275096 CTTCCTTCGTGAGTTTTCGCTTGAGACAAGCGAACAACACCTTACGCTGTGATACCTTGA 275155 Query 176253 GACCATC 176259 ||||||| Sbjct 275156 GACCATC 275162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620736782281280