Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq598 255 7e-63 seq176 246 4e-60 seq715 174 2e-38 seq2 93.3 5e-14 >seq598 Length=3624 Score = 255 bits (282), Expect = 7e-63 Identities = 629/939 (67%), Gaps = 25/939 (3%) Strand=Plus/Minus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||||||||| || || || || | ||||| |||||| ||||||| ||||||||||| Sbjct 3469 ACTTTGGAAGAGCAATCGACGCGAGGTTGCATACAGCCACCTCATCCGAATCTGTGTACT 3410 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTTA---ATCGTCCCCAAATTCTTTTGGTTAC 106568 | | | || ||||||||| ||| ||||| || | |||| ||||| Sbjct 3409 CGATCACCTCACAGCACAAGTTG---CTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCG 3353 Query 106569 TCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACT 106628 ||| |||| ||| |||||||| | |||||| ||||| |||||||| |||| |||| Sbjct 3352 ACTTGCGGTTGGCCGCGTCCTTGTACAACATGTAAGGCGTACCCGTCTCGATCTGCGACT 3293 Query 106629 TGAGAATTGCCTTCCACACATCGGCGGCTG-GTACA-ATGGCGTTG---GCCCGTCCCTC 106683 |||||| || ||| | || |||| | || |||| ||| ||| |||||| Sbjct 3292 CGAGAATAGCGAACCAGA-----GCTGCTGAGCACGGATGGTCTTGCGAGCCTTTCCCTC 3238 Query 106684 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGG-AGAGACCTG 106742 || |||||||| | ||| | | || ||||| |||||| | || | | |||| || | Sbjct 3237 AGCTTCGTACTTGGCGTACAACGTCTCGAACTCTTCACCC-CAGCAGCTGTAGAGGCCAG 3179 Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 | |||| || || ||||| | | ||| | || | || || ||||||||||| | Sbjct 3178 GGGCCTCGTTCGGGCAGAACAAACTCCAGTCGCCGTTCGATTCCACACGCTTCATGAACA 3119 Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGG 106861 ||||| ||||||| | | || | ||| | | ||| | | || | | ||| ||| Sbjct 3118 AATCTGGGATCCACAACGCGTAGAATAAATCACGAGCACGGTGGAGCT-CATTACCGTGG 3060 Query 106862 TTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 106920 || || | || || | |||||| | ||| ||||||||||||||||| | |||| || Sbjct 3059 TTCT-TCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGATGGC 3001 Query 106921 GATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 106977 || || ||||| || ||| | | || | || ||||| || ||| |||| || || Sbjct 3000 GAACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAACAC 2941 Query 106978 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 107037 || | |||||||| | ||||| || || || || || ||||| | ||| | Sbjct 2940 ACGCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTTAGT 2881 Query 107038 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 107097 ||| | | | || ||| | || ||||| || |||||||| ||||| || || Sbjct 2880 GGCACGGATGTTGTGCATGCTGACACCGATACCACCGGCCCACTTGGAGATGCAAGCGCA 2821 Query 107098 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 107157 | | | || || |||||||||| | ||| ||||| ||||| | || | | |||||| Sbjct 2820 GTTCTTGAGCGTGTCATAGATACCCTCGATGGAGTCATCCTTCATAGCAAGCAAGAAGCA 2761 Query 107158 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 107217 || | ||| || | || |||||||| ||||| | |||||| || ||||| |||| Sbjct 2760 CGACGATAGCTGAGGACGAGGCGTACCAGCGTTGAACAAGGTTGGCGTCGCGTGCGTGAA 2701 Query 107218 CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGAT 107277 | |||||||| | ||||| ||||| | | | ||||||||||| |||||| Sbjct 2700 GAAGTTCTGGGACATGTATTCGTAGGTCTCGAGCGCCGCCGCAATGTCTTCCTTGTGGAT 2641 Query 107278 GCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCG 107337 || ||| |||||||| || ||| | || || ||||| | ||||| | | || Sbjct 2640 ACCAATGCTCACACGCAAAATCATCTGCTGTGGACGCTCCATCACCTTGCCACCAATGCG 2581 Query 107338 TTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 | | || ||||||||| || |||| |||||||| Sbjct 2580 CAGCAAGTACGACTTCTCAAGCGTCTTGAAGCCAAAGTA 2542 >seq176 Length=73234 Score = 246 bits (272), Expect = 4e-60 Identities = 584/864 (68%), Gaps = 35/864 (4%) Strand=Plus/Minus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||| || |||||||| || || | ||||| ||||| ||||||| ||||||||||| Sbjct 73079 ACTTCGGTAGGGCGATCGACGCAAGGTTGCACACAGCGACCTCATCCGAATCTGTGTACT 73020 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTTA---ATCGTCCCCAAATTCTTTTGGTTAC 106568 | | | || ||||||||| ||| ||||| || | |||| ||||| Sbjct 73019 CGATCACCTCACAGCACAAGTTG---CTCGAGCGGATCGTACCGAGGTTCTGCTGGTTCG 72963 Query 106569 TCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACT 106628 ||| || |||||||||||| ||||| || ||||| |||||||| ||||||||| Sbjct 72962 ACTTGCGATTCGCCGCATCCTTGTACAGCATATACGGCGTACCCGTCTCGATCTGTGACT 72903 Query 106629 TGAGAATTGCCTTCCACACATCGGCGGCTG-GTACA-ATGGCGTTG---GCCCGTCCCTC 106683 ||| || || ||| | || |||| | || |||| ||| ||| |||||| Sbjct 72902 CGAGGATGGCGAACCAGA-----GCTGCTGAGCACGGATGGTCTTGCGAGCCTTTCCCTC 72848 Query 106684 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTG 106742 || || ||||| | ||| | | || |||||||| ||| | || ||| |||||||| Sbjct 72847 AGCTTCATACTTGGCGTACAACGTCTCGAACTCCTCGCCC-CAGCACTCGTAGAGACCTT 72789 Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 | || | || ||| ||||| | | ||||| ||| | |||| || ||||||||||| | Sbjct 72788 GAGCTTCGTTTGGGCAGAACAAACTCCATTCACCGTTCGCCTCCACACGCTTCATGAACA 72729 Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACC---GAGCCTCTTCGTCACCT 106858 ||||| ||||||| ||||||| || | | ||| |||| || | ||| Sbjct 72728 AATCTGGGATCCACAACCCGTAAAAGAGGTCACGAGCACGATGGAGC----TCATTACCG 72673 Query 106859 TGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGAC 106917 ||||| || | || || | |||||| | ||| ||||||||||||||||| | |||| Sbjct 72672 TGGTTCT-TCTTCAAGTCCAAGAACTCGAAGATGTCCGCGTGCCATGGCTCCAAGTAGAT 72614 Query 106918 TGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 106974 |||| || ||||| || ||| | | || | || ||||| || ||| |||| || Sbjct 72613 GGCGAACGAACCCTTGCGCTTGCCTCCGCCCTGGTCAACGTAGCGAGCCGTGTCGTTGAA 72554 Query 106975 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 107034 || || | |||||||| | ||||| || || || || || ||||| | || Sbjct 72553 CACACGCAACATTGGAACGAGACCATTCGACGATCCGTTCGTACCGCGAATGTAACTGTT 72494 Query 107035 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 107094 | |||| | | | || || || || || || || |||||||| ||||| || Sbjct 72493 AGTGGCACGGATGTTGTGCATACTGATACCGATGCCACCGGCCCACTTGGAGATAGATGC 72434 Query 107095 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 107154 || | | | || || | |||||||| | || ||||| ||||| |||| | | ||| Sbjct 72433 GCAGTTCTTGAGCGTGTCGTAGATACCCTCAATGGAGTCATCCTTCATGGCAAGCAAGAA 72374 Query 107155 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 107214 || |||| ||| || | ||| ||||| | ||||| || ||||||| ||||| | Sbjct 72373 ACACGACGACAACTGAGGGCGTGGCGTACCCGAGTTGAAAAGAGTTGGTGAGCCGTGAGT 72314 Query 107215 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGA-CAGAATCAATGTCTTCCCCGT 107273 ||| | ||||||||||| | |||||| ||| |||| || | || ||||| || Sbjct 72313 GAAGAAGCCTTGGGACATGTAGTCGTACATCTG-AAGAGCACCGGCGATATCTTCTTTGT 72255 Query 107274 GGATGCCGATGGCCACACGCATAA 107297 |||||||||| ||||||| ||| Sbjct 72254 GGATGCCGAT--ACACACGCGTAA 72233 >seq715 Length=275277 Score = 174 bits (192), Expect = 2e-38 Identities = 388/578 (67%), Gaps = 12/578 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || ||||| |||||||| |||||||||||||| || | || || | ||||| Sbjct 111540 TATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCATC 111481 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 |||||||||| || |||||| | || | || |||| | ||| |||||| Sbjct 111480 CAGTCAAATGGGTTAGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTGGAGAAGACGA 111421 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACAT 117165 || | || |||| ||||||| | |||| | | |||||||||||||| || | | Sbjct 111420 TCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAGCTCGACT 111361 Query 117166 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 117225 ||||| | |||| || |||| | ||||| ||| || || || | || || ||||| Sbjct 111360 GGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCATCACTGACAATCTCGTGG 111301 Query 117226 ATA---GTTTC-GGTAGTGGGTCTATTACGCAAAG--TCTTGAAGAGCTCCACGGCAAAC 117279 || | || || || ||| | || ||| | ||| ||||| ||| || Sbjct 111300 ATTCGCGACTCTGGGAGACGGT---TGAC---AAGCTTGTTGTAGAGCAAGCAGGCGAAG 111247 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 || ||||||||| || || || ||||| || || ||||||| ||||| |||||| Sbjct 111246 TCACAGTGGAGACCTTCGTCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATG 111187 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 ||||| |||||||| | ||| | | | |||||| || || ||||||||||||||||| Sbjct 111186 AGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCCTCA 111127 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTC 117459 | || || || | | ||||| || || | | || || |||| |||| Sbjct 111126 ATGGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACACCAGCGG 111067 Query 117460 ATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGC 117519 | ||||| || |||||||||| | ||||| | || | ||||| || || || Sbjct 111066 AGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAAGTGG 111007 Query 117520 TTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAA 117557 ||||| || | ||||||| ||||| |||||||||| Sbjct 111006 TTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAA 110969 >seq2 Length=488588 Score = 93.3 bits (102), Expect = 5e-14 Identities = 173/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 168467 AGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAG-AAGGTTAA 168525 |||||||||||||||| || |||||||| |||||||| | || | || || | || Sbjct 274920 AGCATCCTTACCACCCTGAAGTCGCGTACCGAATTGACCCGAAGGGTAGAGCAATGGCAA 274979 Query 168526 TGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAG-GATACT 168584 |||||| | ||| |||||| | |||| || ||||| || | | ||| ||| || Sbjct 274980 -GTTGTTCGCACCAACGTAGTCCTGCGCCATATTCACAATTGT-TGAGTGAAGTGATGCT 275037 Query 168585 TCACCATGGTGGTACGCAGACTTGTCCGCGACA-TATGCCGCCAGTTGTGCCACCTTCAT 168643 ||||| |||||||| || | || | | ||| || |||| || || |||||||| | Sbjct 275038 TCACCGTGGTGGTATGCCG-TATGCTCACTACAGTAACCCGCGAGCTGCGCCACCTTGAC 275096 Query 168644 TTCATCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAG 168703 ||| | | |||| || | || ||||| ||| ||| || | |||||| |||||| Sbjct 275097 TTCCTTCGTGAGTTTTCGCTTGAGACAAGCGAACAACACCTTACGCTGTGATACCTTGAG 275156 Query 168704 ACCATC 168709 |||||| Sbjct 275157 ACCATC 275162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975460673760