Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20oligandrum_20[genbank_20GCA_5F001573145.1_202016-02-25] 724 sequences; 35,934,203 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq56 131 4e-25 seq52 131 4e-25 >seq56 Length=164687 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || || || ||||| || | || || | || || ||||||||||| || Sbjct 65722 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 65663 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| || || || |||||||| ||||| ||||| ||||| || || || |||||| Sbjct 65662 GCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTCTGCTTG 65603 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| |||||| ||||||| || || || || || | ||||| || |||| ||| Sbjct 65602 ACGTTGTCAATGCTGTCCGATGGCTCGACATCGAGCGTGATGGTCTTGCCCGTCAGAGTC 65543 Query 195124 TTTACGAACACTTGCAT 195140 || || || | ||||| Sbjct 65542 TTCACAAAGATCTGCAT 65526 >seq52 Length=165522 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || || || ||||| || | || || | || || ||||||||||| || Sbjct 28993 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCGTCCTCGAGCTGCTTGCCA 28934 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | ||| || || ||||||||||| || || ||||| || || || ||||| Sbjct 28933 GCAAAGATCAATCGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 28874 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| ||||| | ||||||| || || ||||| || | |||||| || ||||| || Sbjct 28873 ACGTTGTCAATCGAGTCCGAAGGCTCGACGTCAAGCGTGATCGTCTTACCCGTCAACGTC 28814 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 28813 TTCACGAAGATCTGCAT 28797 Score = 129 bits (142), Expect = 1e-24 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || || || ||||| || | || || | || || |||||||||||||| Sbjct 10631 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCGAGCTGCTTACCA 10690 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | ||| || || ||||||||||||||||| ||||| || || || |||||| Sbjct 10691 GCAAAGATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTCTGCTTG 10750 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| | ||||||| || || || | |||| ||||| || || | || Sbjct 10751 ACATTGTCAATCGAGTCCGAAGGCTCGACGTCCAACGTAATGGTCTTGCCCGTGAGTGTC 10810 Query 195124 TTTACGAACACTTGCATTTATGGTTACTTGG 195154 || ||||| | ||||| | |||| | ||| Sbjct 10811 TTGACGAAGATCTGCATCTTGGGTTTCCTGG 10841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109471308171308